Gene
| Gene Model ID | pfu_aug1.0_26082.1_62406 |
|---|---|
| Locus | scaffold26082.1 : 1 ... 7978 : - |
| To GenomeBrowser | scaffold26082.1:1..7978 |
| Genes list of scaffold | scaffold26082.1 |
| Synonym | pfu_aug2.0_459.1_30794 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_26082.1_62406.t1 | 4 | 1 | TSP_1 | 11 | 33 | 8.0e-20 | 70.7 | 0.026 | 380.0 | 1.2 |
| pfu_aug1.0_26082.1_62406.t1 | 4 | 2 | TSP_1 | 39 | 59 | 8.0e-20 | 70.7 | 0.22 | 3300.0 | -1.8 |
| pfu_aug1.0_26082.1_62406.t1 | 4 | 3 | TSP_1 | 79 | 119 | 8.0e-20 | 70.7 | 7.2e-14 | 1.1e-09 | 38.2 |
| pfu_aug1.0_26082.1_62406.t1 | 4 | 4 | TSP_1 | 130 | 180 | 8.0e-20 | 70.7 | 8.3e-16 | 1.2e-11 | 44.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_26082.1_62406.t1 | gi|298286476|ref|NP_001177233.1| | hemicentin-1 precursor [Danio rerio] | 4.0e-22 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| trochophore | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_26082.1_62406.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_26082.1_62406.t1 gtgattttacgtgcttccgtaaattcagaacaaaaagaggaaaggaattctgtaaaggtcccgtgaggaaaaagaataaa tatccaaatgcagagaaatgctgtgccaagcgtgggaagggatttgccatggaaatagaaacagttggcaagaatcggta cagatgtactccgtgcagtgccttgttgacacccagacctaccatcatatctatacgtacaacgtcagagcgtcctgact ggggtaactggagtccatgtagcaccacatgtggcgccggctggagatcacgttatagaatgtgtgatgactgcgacaaa aatcactttgaaaatgtccaatcagaaccctgtatgcagaacttctactgtccagtggacggtaactggggcccgtggtt tgcttggactccttgttcagattcctgtggaggagggacaaggaaaagggagagacgttgtaattatcctccacctacac atgggggtcgggactgtccaggggacagagagaaagaagaatcttgtaacgaagaaccatgtgcaggattcgctattgct cctttgtaa |
|
Protein
| Protein ID | pfu_aug1.0_26082.1_62406.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_26082.1_62406.t1 DFTCFRKFRTKRGKEFCKGPVRKKNKYPNAEKCCAKRGKGFAMEIETVGKNRYRCTPCSALLTPRPTIISIRTTSERPDW GNWSPCSTTCGAGWRSRYRMCDDCDKNHFENVQSEPCMQNFYCPVDGNWGPWFAWTPCSDSCGGGTRKRERRCNYPPPTH GGRDCPGDREKEESCNEEPCAGFAIAPL |
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