Gene
| Gene Model ID | pfu_aug1.0_2535.1_23009 |
|---|---|
| Locus | scaffold2535.1 : 43946 ... 52863 : + |
| To GenomeBrowser | scaffold2535.1:43946..52863 |
| Genes list of scaffold | scaffold2535.1 |
| Synonym | pfu_aug2.0_310.1_00583 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2535.1_23009.t1 | 1 | 1 | PDCD2_C | 123 | 275 | 3.6e-39 | 133.9 | 5.00264e-43 | 7.4e-39 | 132.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2535.1_23009.t1 | gi|225707420|gb|ACO09556.1| | Programmed cell death protein 2 [Osmerus mordax] | 5.0e-39 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_2535.1_23009.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2535.1_23009.t1 atgttcgaaactgaagatgactggggtgtagatgacgatgactggggagatgaaaaagaagatgattcggaaatggataa agttagcgaatgggatactattacctccgaacctgtagcagattcaataagtgagatttgtccttcgaatcattttgaag ttgaaagtgaacaaaaaagagattgttctgatgaaaatcgtggaaagataaaagggaatgaaaatgtatttgaaggaaag ctgagtgtcggtattgaaaatcttaatatcaaacatgatcagacaggtgctgaaaaccatgttggaccgaagtatgattg tttggttgctcgttatgttaatgtgattgacgaacctagctcatgtgagaatgatgacaatcatgtgcaaaaacttttgc gtgaatatgaaagaactgaagggtcagtcatgtcatcattggatgatgcagatagtaggtcgtcagcagatgagaaatat gaaaaagatgacatcagacatggggacaaagttttccatcattttacaaagcaggtctccaactgtccacagcaatgtat aaggtatcagtggaatggtacaccactgtatataagcactcccacacctgatgttctaaacgcaggaaagatactatgta aatactgtggggctccattagtatttgaattgcagttaatgccagcattagtcaactatttaaagttaccagaccaatca gaatcagcagtggagtttggcactgtgcttgtctatacctgtaaggcaagttgttggtccgacagtgataccatacggca tgaaactgtagtggtacaacaggaccctgatcaacatctattcaaataa |
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Protein
| Protein ID | pfu_aug1.0_2535.1_23009.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2535.1_23009.t1 MFETEDDWGVDDDDWGDEKEDDSEMDKVSEWDTITSEPVADSISEICPSNHFEVESEQKRDCSDENRGKIKGNENVFEGK LSVGIENLNIKHDQTGAENHVGPKYDCLVARYVNVIDEPSSCENDDNHVQKLLREYERTEGSVMSSLDDADSRSSADEKY EKDDIRHGDKVFHHFTKQVSNCPQQCIRYQWNGTPLYISTPTPDVLNAGKILCKYCGAPLVFELQLMPALVNYLKLPDQS ESAVEFGTVLVYTCKASCWSDSDTIRHETVVVQQDPDQHLFK |
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