Gene
| Gene Model ID | pfu_aug1.0_2468.1_01111 |
|---|---|
| Locus | scaffold2468.1 : 50896 ... 80060 : + |
| To GenomeBrowser | scaffold2468.1:50896..80060 |
| Genes list of scaffold | scaffold2468.1 |
| Synonym | pfu_aug2.0_2511.1_05561 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2468.1_01111.t1 | 4 | 1 | Hexapep | 20 | 52 | 1.8e-06 | 27.1 | 2.3e-06 | 0.017 | 14.6 |
| pfu_aug1.0_2468.1_01111.t1 | 4 | 2 | Hexapep | 58 | 73 | 1.8e-06 | 27.1 | 0.0003 | 2.3 | 7.8 |
| pfu_aug1.0_2468.1_01111.t1 | 4 | 3 | Hexapep | 89 | 116 | 1.8e-06 | 27.1 | 2.4e-05 | 0.18 | 11.3 |
| pfu_aug1.0_2468.1_01111.t1 | 4 | 4 | Hexapep | 105 | 139 | 1.8e-06 | 27.1 | 3.0e-05 | 0.22 | 11.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2468.1_01111.t1 | gi|327279885|ref|XP_003224686.1| | PREDICTED: dynactin subunit 6 [Anolis carolinensis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| maleGonad | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_2468.1_01111.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2468.1_01111.t1 atgtctatttcacctctctttgtttcgaataatcatcgaaatagcctactaaatcgtgtcaaagtggcagctggtgccat gatatgtgaggaatgtgaattgataggagatataacaataggagcaaaaacgatcattcatcccaaagctcgcatcatag cggaagatggtcctattatcataggcgataataatatcatagaagaactagttcatattgtaaacaggaatccagataag tcaggtggaacacagcaggttatgattataggaaacaacaatatatttgaagtaggatcttatattgaatcaacaaaaat aggggaccacaatgtggtggaagctaaaggttatgtagggcgccacctagagatgacatcaggttgtattattggggcca agtgtgaggtcaaaggtcaggagaggttaccagagaacacggtgatttcaggatctgattgtgtaagacgtattgctgca gacagaccccctgcccagggcttgcaaattgaatttctaatgaaaattttaccaaactaccattatattaggaggttaaa atctggatcatctcagaggaaatga |
|
Protein
| Protein ID | pfu_aug1.0_2468.1_01111.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2468.1_01111.t1 MSISPLFVSNNHRNSLLNRVKVAAGAMICEECELIGDITIGAKTIIHPKARIIAEDGPIIIGDNNIIEELVHIVNRNPDK SGGTQQVMIIGNNNIFEVGSYIESTKIGDHNVVEAKGYVGRHLEMTSGCIIGAKCEVKGQERLPENTVISGSDCVRRIAA DRPPAQGLQIEFLMKILPNYHYIRRLKSGSSQRK |
|