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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_24462.1_62306
Locus scaffold24462.1 : 1 ... 4555 : -
To GenomeBrowser scaffold24462.1:1..4555
Genes list of scaffold scaffold24462.1
Synonym pfu_aug2.0_348.1_27269

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_24462.1_62306.t1 1 1 Exo_endo_phos 2 96 2.9e-07 30.6 2.2e-11 3.2e-07 30.5

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_24462.1_62306.t1 gi|291239603|ref|XP_002739715.1| PREDICTED: uncharacterized protein LOC100369100 [Saccoglossus kowalevskii] 2.0e-17

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 2
egg-4cell 1
>Adult tissues

Transcript
Transcript IDpfu_aug1.0_24462.1_62306.t1
Definition-
>pfu_aug1.0_24462.1_62306.t1
atgaatacacacttttcattaagtcatgaggctcgagccaagaaagtagtagaaatctggcactatataaaggatataaa
aggacctgtggttttagtgggagattttaacgaatttccagaaaaacctcctatgagatttttacgtggagaggagactt
tggaaggatacagagcatcagggattaaagacagctggcagctattaaggaaagatgaagcaggatttacatttagctgt
ttacgtcctgagcctacagaaaggattgattacatttacttccgggatggtgaaggattattgttgaaaaaaatagcatt
ggaagatgatggcttgaaagggtag

Protein
Protein IDpfu_aug1.0_24462.1_62306.t1
Definition-
>pfu_aug1.0_24462.1_62306.t1
MNTHFSLSHEARAKKVVEIWHYIKDIKGPVVLVGDFNEFPEKPPMRFLRGEETLEGYRASGIKDSWQLLRKDEAGFTFSC
LRPEPTERIDYIYFRDGEGLLLKKIALEDDGLKG

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