Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_237.1_50743
Locus scaffold237.1 : 89086 ... 106187 : +
To GenomeBrowser scaffold237.1:89086..106187
Genes list of scaffold scaffold237.1
Synonym pfu_aug2.0_23.1_10111

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_237.1_50743.t1 1 1 Methyltransf_31 27 134 5.8e-17 61.6 4.6e-20 8.6e-17 61.1
pfu_aug1.0_237.1_50743.t1 1 1 Methyltransf_23 40 116 7.1e-06 25.8 5.6e-09 1.0e-05 25.3
pfu_aug1.0_237.1_50743.t1 1 1 Methyltransf_11 43 101 2.7e-07 30.9 2.7e-10 5.0e-07 30.1
pfu_aug1.0_237.1_50743.t1 1 1 Ubie_methyltran 43 103 1.6e-06 27.4 1.8e-09 3.3e-06 26.3

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_237.1_50743.t1 gi|118092981|ref|XP_421735.2| 0.0

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
egg-4cell 1
egg-Dshape 1
trochophore 1
>Adult tissues
maleGonad 1
mantle 1

Transcript
Transcript IDpfu_aug1.0_237.1_50743.t1
Definition-
>pfu_aug1.0_237.1_50743.t1
atgtaccgaaacgacctaaatcatgcaccgaaacgtctttgtaccatgtaccgaaacgactttcttctaccatatattgc
agtagctcgcaagtacatagactaccatacacagaagtttggctttgacaagccaaatatagactttgtgcagggataca
tagagaaattgacggaggccggaatcaaagaaaacttctacgacatcattatatcaaactgtgtcatcaacttatctcca
gacaaaaaagctgttttgagagatgcatacaaagttttgaaggttggaggtgaattgtacttcagtgatgtctacacaga
ttcacatctgacagaggaaattaggaagcatgaagtcttatggggtgaatgcatatcaggggccctacactggaaggagt
tatttgacttggccgatgagctcgggttcagtagaccataccttgtcactgcctctcctatagacatagagagggaggac
ttccagaaaatattgggagaggccaagtttgtatcagccacatacaggttgttcaagctaccagcaacaaaggaaagcag
tacacaagtaatctataatggtgagatagagggatatgaagatcagctagtctttgaacatgataatgtgttcaagaaaa
gtgatgtagtgtgtgtgggaggtgacatcgtgacagccctngaaagcttcacgattttgtga

Protein
Protein IDpfu_aug1.0_237.1_50743.t1
Definition-
>pfu_aug1.0_237.1_50743.t1
MYRNDLNHAPKRLCTMYRNDFLLPYIAVARKYIDYHTQKFGFDKPNIDFVQGYIEKLTEAGIKENFYDIIISNCVINLSP
DKKAVLRDAYKVLKVGGELYFSDVYTDSHLTEEIRKHEVLWGECISGALHWKELFDLADELGFSRPYLVTASPIDIERED
FQKILGEAKFVSATYRLFKLPATKESSTQVIYNGEIEGYEDQLVFEHDNVFKKSDVVCVGGDIVTAXESFTIL

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495