Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_237.1_50741
Locus scaffold237.1 : 65656 ... 69322 : +
To GenomeBrowser scaffold237.1:65656..69322
Genes list of scaffold scaffold237.1
Synonym pfu_aug2.0_23.1_10115

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_237.1_50741.t1 7 1 Ank_4 59 109 6.1e-25 87.1 1.5e-08 4.5e-05 23.8
pfu_aug1.0_237.1_50741.t1 3 1 Ank_2 60 153 3.5e-35 120.1 3.8e-16 1.1e-12 48.0
pfu_aug1.0_237.1_50741.t1 6 1 Ank_3 60 84 8.9e-19 65.7 0.0014 4.0 7.9
pfu_aug1.0_237.1_50741.t1 6 1 Ank_5 60 81 1.1e-17 63.6 0.0076 23.0 5.4
pfu_aug1.0_237.1_50741.t1 7 1 Ank 62 83 7.1e-25 85.5 0.0085 25.0 4.8
pfu_aug1.0_237.1_50741.t1 6 2 Ank_5 75 109 1.1e-17 63.6 0.0039 12.0 6.3
pfu_aug1.0_237.1_50741.t1 6 2 Ank_3 92 117 8.9e-19 65.7 4.6e-05 0.14 12.5
pfu_aug1.0_237.1_50741.t1 7 2 Ank 93 120 7.1e-25 85.5 0.00018 0.54 10.1
pfu_aug1.0_237.1_50741.t1 6 3 Ank_5 108 160 1.1e-17 63.6 8.9e-11 2.6e-07 30.6
pfu_aug1.0_237.1_50741.t1 7 2 Ank_4 124 164 6.1e-25 87.1 1.9e-06 0.0055 17.1
pfu_aug1.0_237.1_50741.t1 6 3 Ank_3 125 149 8.9e-19 65.7 7.0e-06 0.021 15.0
pfu_aug1.0_237.1_50741.t1 3 2 Ank_2 128 219 3.5e-35 120.1 7.2e-21 2.1e-17 63.2
pfu_aug1.0_237.1_50741.t1 7 3 Ank 128 154 7.1e-25 85.5 5.9e-06 0.017 14.8
pfu_aug1.0_237.1_50741.t1 7 3 Ank_4 158 209 6.1e-25 87.1 4.0e-09 1.2e-05 25.6
pfu_aug1.0_237.1_50741.t1 7 4 Ank 158 186 7.1e-25 85.5 9.0e-06 0.027 14.2
pfu_aug1.0_237.1_50741.t1 6 4 Ank_5 177 223 1.1e-17 63.6 1.1e-06 0.0031 17.6
pfu_aug1.0_237.1_50741.t1 7 5 Ank 189 220 7.1e-25 85.5 3.6e-06 0.011 15.5
pfu_aug1.0_237.1_50741.t1 6 4 Ank_3 189 217 8.9e-19 65.7 2.3e-05 0.069 13.4
pfu_aug1.0_237.1_50741.t1 7 4 Ank_4 201 232 6.1e-25 87.1 9.3e-05 0.27 11.7
pfu_aug1.0_237.1_50741.t1 3 3 Ank_2 509 604 3.5e-35 120.1 5.4e-08 0.00016 21.9
pfu_aug1.0_237.1_50741.t1 6 5 Ank_5 515 530 1.1e-17 63.6 0.18 530.0 1.0
pfu_aug1.0_237.1_50741.t1 7 5 Ank_4 517 531 6.1e-25 87.1 0.055 160.0 2.9
pfu_aug1.0_237.1_50741.t1 7 6 Ank 521 568 7.1e-25 85.5 0.00015 0.45 10.4
pfu_aug1.0_237.1_50741.t1 6 5 Ank_3 521 565 8.9e-19 65.7 0.032 95.0 3.7
pfu_aug1.0_237.1_50741.t1 7 6 Ank_4 550 577 6.1e-25 87.1 0.56 1700.0 -0.3
pfu_aug1.0_237.1_50741.t1 6 6 Ank_3 572 601 8.9e-19 65.7 0.036 110.0 3.5
pfu_aug1.0_237.1_50741.t1 7 7 Ank 573 604 7.1e-25 85.5 0.002 5.9 6.8
pfu_aug1.0_237.1_50741.t1 7 7 Ank_4 588 612 6.1e-25 87.1 0.053 160.0 3.0
pfu_aug1.0_237.1_50741.t1 6 6 Ank_5 589 613 1.1e-17 63.6 0.53 1600.0 -0.5

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_237.1_50741.t1 gi|347970732|ref|XP_310397.7| AGAP003839-PA [Anopheles gambiae str. PEST] 2.0e-26

Transcript
Transcript IDpfu_aug1.0_237.1_50741.t1
Definition-
>pfu_aug1.0_237.1_50741.t1
atggagaagaataaagaggaagggataagtcctggcctgtttagagtaaagtactggtcatccatgaaggcactgtcaaa
ctgggcaatgtttgaaaaggaacttaataatctggactctaacgagagaaaaaaaattctgaagaaatctttctgccaga
aagaaattgacgagacacttcttcgagcttgtgaaagaggtctgttgtctgcagttagatacctggttgaaaaatgtaat
gtggacataaggaaagatggaagaaaagagcgctgcttgtggacggcagtttctttcggaaatttgaatgtagccaagta
tctggttgaaaatttcgctcctaacgtcaactggaaagatgatgaggaagtgagtgttgttcactctgcatgtgtaaatg
gaaacttgccgttagtggtgtaccttctaaagcatggtggagacataacaaccaaagacaacaaaaaatccacctgtttg
atggctggtgctttctctggggtattacagatatgtaagcttgtagtgcagaaaggggtgagcgtgaatgcgaaaaccac
tgcgggacaaacggcaattcatagtgctattatgaacagggctccattagaagttgttgaatatttagatagtgcaggag
cagatctgaactgtgtgaacgcacagaacatccctattgtgatctatgctgctctaaagatcaaagacatcaggcaagat
tcaaccaaagtccttggatatctgttaaagaattctaaggtcaagatggcagataaaatcatcgctctgaaatatgcttt
tgccgtgctcaagggtatcggaaacgaaccaaggggatacaagttcctaaccagagcgcttcagttgcaagagatgcata
atgtagggaaacttggagaaaatggtcataaggttgacactgattatgaatttgtgaaccaggatctgacatcggtggaa
gaagtgaaagaactaaagaaagacccagtcaaaggcagcaagtacatgttaggtctgtacttcaggatgcatttgcagta
tggctacaacaatttgaatttctttggaaattttctcaatgatttcatcaacctgagatttgcagagctctttcttaatg
cctatgcgttcctgttccaccatacattttgcggcgatgaaaatgtcagagatcttccacatgtcttttattcaggattc
ttgttcaaaattatacgacttaaagccaagtctgatgacttcttacctttactgaaggactttctgagaagaattgtgag
ctccttcaactaccgcaacaaaaagtgtaccagaatagtgccagcattgaatcatctatcccaaagccaaaatagcaaaa
tgccgtacgtagaagtccatgcactgaggaatttgattgaagcaccttttgatctcagtactgacactagacacaagttc
ctgttcatgagatttatcattgagctcttgtcactcacgttagaactctaccaaggggaacaagactttatctcctctca
agtcagacaactcatcaagtttaacttcttggatgagagaggcagcacatttctccatattgcaatccaaaatattgaga
tgcctcattatgacaaaggaacaccaggacccattgatgaagaattccaggtggaaattgctaaaatgttcatcgaagaa
ggcagccctgtaaatgccatggaccactatatgtttacaccagctcatgtgttggggagcagtggctatgtctgccgtgc
acatgagattgcagagttactcattgaacatgatgcccatcttgactaccgatcactaacgggggaatctgcactagaga
gcctcgaggattatgccctcatagacgaagacaccgtcaaataccagcgattgcaatgcttagcagccgaagttataaan
aaaattaccaaataa

Protein
Protein IDpfu_aug1.0_237.1_50741.t1
Definition-
>pfu_aug1.0_237.1_50741.t1
MEKNKEEGISPGLFRVKYWSSMKALSNWAMFEKELNNLDSNERKKILKKSFCQKEIDETLLRACERGLLSAVRYLVEKCN
VDIRKDGRKERCLWTAVSFGNLNVAKYLVENFAPNVNWKDDEEVSVVHSACVNGNLPLVVYLLKHGGDITTKDNKKSTCL
MAGAFSGVLQICKLVVQKGVSVNAKTTAGQTAIHSAIMNRAPLEVVEYLDSAGADLNCVNAQNIPIVIYAALKIKDIRQD
STKVLGYLLKNSKVKMADKIIALKYAFAVLKGIGNEPRGYKFLTRALQLQEMHNVGKLGENGHKVDTDYEFVNQDLTSVE
EVKELKKDPVKGSKYMLGLYFRMHLQYGYNNLNFFGNFLNDFINLRFAELFLNAYAFLFHHTFCGDENVRDLPHVFYSGF
LFKIIRLKAKSDDFLPLLKDFLRRIVSSFNYRNKKCTRIVPALNHLSQSQNSKMPYVEVHALRNLIEAPFDLSTDTRHKF
LFMRFIIELLSLTLELYQGEQDFISSQVRQLIKFNFLDERGSTFLHIAIQNIEMPHYDKGTPGPIDEEFQVEIAKMFIEE
GSPVNAMDHYMFTPAHVLGSSGYVCRAHEIAELLIEHDAHLDYRSLTGESALESLEDYALIDEDTVKYQRLQCLAAEVIX
KITK

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495