Gene
| Gene Model ID | pfu_aug1.0_2367.1_44347 |
|---|---|
| Locus | scaffold2367.1 : 8786 ... 17012 : + |
| To GenomeBrowser | scaffold2367.1:8786..17012 |
| Genes list of scaffold | scaffold2367.1 |
| Synonym | pfu_aug2.0_1.1_03367 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2367.1_44347.t1 | 3 | 1 | Ank_4 | 26 | 86 | 1.3e-14 | 54.1 | 1.2e-05 | 0.036 | 14.5 |
| pfu_aug1.0_2367.1_44347.t1 | 2 | 1 | Ank_5 | 53 | 74 | 4.8e-09 | 36.1 | 0.00043 | 1.3 | 9.3 |
| pfu_aug1.0_2367.1_44347.t1 | 2 | 1 | Ank_2 | 54 | 130 | 8.8e-20 | 70.8 | 6.6e-17 | 1.9e-13 | 50.5 |
| pfu_aug1.0_2367.1_44347.t1 | 3 | 1 | Ank | 66 | 97 | 9.9e-14 | 50.3 | 1.4e-09 | 4.2e-06 | 26.3 |
| pfu_aug1.0_2367.1_44347.t1 | 3 | 1 | Ank_3 | 66 | 94 | 5.8e-11 | 41.5 | 8.7e-08 | 0.00026 | 20.9 |
| pfu_aug1.0_2367.1_44347.t1 | 3 | 2 | Ank_4 | 69 | 120 | 1.3e-14 | 54.1 | 9.0e-12 | 2.7e-08 | 34.1 |
| pfu_aug1.0_2367.1_44347.t1 | 2 | 2 | Ank_5 | 86 | 140 | 4.8e-09 | 36.1 | 1.9e-08 | 5.7e-05 | 23.2 |
| pfu_aug1.0_2367.1_44347.t1 | 3 | 2 | Ank | 100 | 130 | 9.9e-14 | 50.3 | 1.8e-07 | 0.00054 | 19.6 |
| pfu_aug1.0_2367.1_44347.t1 | 2 | 2 | Ank_2 | 103 | 153 | 8.8e-20 | 70.8 | 2.6e-09 | 7.8e-06 | 26.1 |
| pfu_aug1.0_2367.1_44347.t1 | 3 | 3 | Ank_4 | 103 | 152 | 1.3e-14 | 54.1 | 1.6e-06 | 0.0049 | 17.3 |
| pfu_aug1.0_2367.1_44347.t1 | 3 | 2 | Ank_3 | 103 | 126 | 5.8e-11 | 41.5 | 8.0e-06 | 0.024 | 14.8 |
| pfu_aug1.0_2367.1_44347.t1 | 3 | 3 | Ank_3 | 139 | 152 | 5.8e-11 | 41.5 | 0.86 | 2500.0 | -0.8 |
| pfu_aug1.0_2367.1_44347.t1 | 3 | 3 | Ank | 140 | 152 | 9.9e-14 | 50.3 | 0.66 | 2000.0 | -1.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2367.1_44347.t1 | gi|198428678|ref|XP_002131508.1| | PREDICTED: ankyrin repeat domain-containing protein 45-like [Ciona intestinalis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
| mantle | 1 |
| mantlePallium | 1 |
Transcript
| Transcript ID | pfu_aug1.0_2367.1_44347.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2367.1_44347.t1 atgaaaccagaaccagtatcagtaggtgacacagaagaaacagaagaggaagttgttgaagtcttactcccaaatacaac aattgttacacattgcattctaaaaaataacattgaaagactccaaaaatctttcgaggatgacactgatccttataagg aaacggttcaagaactgttaaatactcgtggagatgatggaaagtcacctcttgatcttgcagctatgctaggtcgaatt gacatgtcaaaggaactaattcaacgtggagcagagattaactctgtaacttcaaagggttattgtgcattacatcatgc agcagcatggggaagaattggagtactgaaagttctagttgaagctattgctgatctacagataaaaaatgtaaacggag agcgagccagggagacagctcttagatacaataagacagaatgtgtagattttctggactgggcagaggcaaagtttgct ttactggacacaataaagacataccaggaaacaatagctgatccagaaaaagtacaaggcagactagctaaagatgataa gaacatagtaatcaattcatgtaaagagaaggcagaatgggtggaaaataccacagatgctacgactcaggatttcattt cacagaaagctgctcttgatgaaatagtcgaacctatcttactaaagttaacggaaccagccccagaaaggacagaaaaa aggtaa |
|
Protein
| Protein ID | pfu_aug1.0_2367.1_44347.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2367.1_44347.t1 MKPEPVSVGDTEETEEEVVEVLLPNTTIVTHCILKNNIERLQKSFEDDTDPYKETVQELLNTRGDDGKSPLDLAAMLGRI DMSKELIQRGAEINSVTSKGYCALHHAAAWGRIGVLKVLVEAIADLQIKNVNGERARETALRYNKTECVDFLDWAEAKFA LLDTIKTYQETIADPEKVQGRLAKDDKNIVINSCKEKAEWVENTTDATTQDFISQKAALDEIVEPILLKLTEPAPERTEK R |
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