Gene
| Gene Model ID | pfu_aug1.0_2335.1_30062 |
|---|---|
| Locus | scaffold2335.1 : 186716 ... 207626 : + |
| To GenomeBrowser | scaffold2335.1:186716..207626 |
| Genes list of scaffold | scaffold2335.1 |
| Synonym | pfu_aug2.0_199.1_30410 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2335.1_30062.t1 | 5 | 1 | zf-C2H2_4 | 431 | 452 | 5.5e-07 | 29.4 | 0.00052 | 1.5 | 9.2 |
| pfu_aug1.0_2335.1_30062.t1 | 5 | 2 | zf-C2H2_4 | 457 | 477 | 5.5e-07 | 29.4 | 0.00058 | 1.7 | 9.1 |
| pfu_aug1.0_2335.1_30062.t1 | 5 | 3 | zf-C2H2_4 | 776 | 797 | 5.5e-07 | 29.4 | 0.0002 | 0.59 | 10.5 |
| pfu_aug1.0_2335.1_30062.t1 | 5 | 4 | zf-C2H2_4 | 897 | 918 | 5.5e-07 | 29.4 | 0.0014 | 4.2 | 7.9 |
| pfu_aug1.0_2335.1_30062.t1 | 5 | 5 | zf-C2H2_4 | 923 | 943 | 5.5e-07 | 29.4 | 0.0017 | 5.1 | 7.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_2335.1_30062.t1 | gi|328715809|ref|XP_003245736.1| | PREDICTED: zinc finger protein basonuclin-2-like isoform X1 [Acyrthosiphon pisum] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_2335.1_30062.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2335.1_30062.t1 atggacggaaagacgatcaagcggccgatagccacacccattggcccttcccttcctgtgaccagcatcccgaccctcct cgagctgaccaagtccgagcagtaccgccggatgctgagcttcatctcctctactaatgcatcttatcctcggctctgtt ttcaggcgattcgctgtacactgccaaactgtccttgtgaatgtttctcacctgcactagataagctgggataccgccac atctataacctggggatgtcagtggaggtcgtacaacctaacattgtctttgacatagctagcctgatgttgtatgggac acatgccacgcccatccgcctcaagatcctcctggatcgcctattcagcgtcttgcaacatgacgaggtgctgcagatac tacagggatttgggtggacctatgaggactacgccagaggctacattctacaggattccaatggtcaagtactggacaag tggacaatagccacccgggaggaggagcacgtcatattacaacagtttctgaggttcggagagacaaagtcaatagcaca ggaaatcattctacaggataccaaggaccaacaggaaatgttccttaaacacaccggcaggtcagactcggaaataaaga agtttatcgagcgcaacaaccacacaatgcagtcatacatgagaacactagagtccagacatttatttggaagcagaatt ccgtttgtaccaatcccggggagaatgttaagtccaggttcgcttgcatgtttttcgccgccaacatcagcatcacgtga cttgcggccacctttggttgctacaggacttggcgcttcaagtcctggttccacgtcaccgctagggagactacagacca tgcagccgtttgaattcagaagagaccacagtccagcaccaagtcccgaaacagccgagaaaaacttgaccgaatcatcc ccatgtggaagtccacagaacctgagttccactccaacctcatcacaatcgattactccgccattcacaccgattaaaag ttcagaaagtcgtgatcatctcagtccaaatcctatgactcttcccatcatgccacctcaagatgatcacgtgaccagag ctctagacttcacgaccgggaaagagcccagtcattcaccaagctccattttctctgatagaaaactcaaacatttaaga aaatcaagcaaccccatcaaaagacattggaatccctctccaggattcggaagtactttggttggaccaaatgggaaaaa gcgagtattatgtacagcatgcaataaaacattctgtgataaaggtgctctaaaaatccattacagtgctgtacatctga aggaaatgcataaatgtacagtagaaggatgcaacatgatgttcagttcacgccgtagcagaaaccgccatagcgctaat ccgaatcctaagttacatatgcctcagaaaagggtgaaattaccagatggagcatccttgattgacgatggttcagataa gtcaaaccgtatgagggcgggcagtcctcctcctaccatggtgatgcctcccactctcggaccacacgggactattcctc ctttagacgctcaggatctccaccccgcaagtcaagctacattctacgctgaaatgaatgcacaaatgtccatgttcccg acccccgaaaaacgaatcaagctggaccaaggtgatgacggaccaaaagaccttagtatgccacccaggagggaaattga aacaaagtttgacaatggaatggccaaagatgatataaaatctgactcgccggttagtcaaagaagcatgagtcggagga agaacaatattccaacaagactagctccttctgaggaagaaaacaatgtgctaagtgatgaagaaaaggatggtgaactc aaaattgacactaaatattccagaaggcgaagcagaattgcagaggccggagcaatggatggtttagatgtagacgataa gctgagggcgtcgtctcagaggtattatttgaatctatctatgtcagatgatgacagaatggagtcgtcgagtgatgtga gcgagggtttcaaaagcgttggtttacctagaaaagactttcctaaaatcgcctcccttttgtcaagatcaggagtgaag gatttgacaagccaagaagccattgattacacaacaaaattcaaggagaggaaagtcgactacccaccaagccctgggtc gacttctgattccgatgatggcagcaatcatgtgggtttgtctaatggatgcactctcaaaaacgatcgaattgaccctg acacttgttctgtatgtggagaggtatttcagaatgctaaagaccttgatattcatttcaaaactgatcatttgaatcat actagcaaggaagccatattgaatgatgcattaaatctcagacgcagaaacgtagattctggaaatgaaagtcatgagga catgtcatcagacgaagaaaactttccagacaacgatgtcggaaacgttcagcaagcagacgataacgacactgaggatg aagaaaatcactgtccactgaacggaaacaagtgtcacgcggaggaagacagcgacgacgacgacgatatgcctcaaggg aaagaactgaatgaaatatgtctggaagagaatgaaatttctgtcttttgccatatctgtcaatccaagttcaaggataa tctcgctttgaaggaacattttgagatgcaccacccaaaagaaacgtttaactgtacagtgacaggctgcgagaaaatct tctcgaccagaaagagcaggaatcgccatagtcagaatgataacttacacagacacctcgcttccggcagacaaaatggc gtgtcatag |
|
Protein
| Protein ID | pfu_aug1.0_2335.1_30062.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2335.1_30062.t1 MDGKTIKRPIATPIGPSLPVTSIPTLLELTKSEQYRRMLSFISSTNASYPRLCFQAIRCTLPNCPCECFSPALDKLGYRH IYNLGMSVEVVQPNIVFDIASLMLYGTHATPIRLKILLDRLFSVLQHDEVLQILQGFGWTYEDYARGYILQDSNGQVLDK WTIATREEEHVILQQFLRFGETKSIAQEIILQDTKDQQEMFLKHTGRSDSEIKKFIERNNHTMQSYMRTLESRHLFGSRI PFVPIPGRMLSPGSLACFSPPTSASRDLRPPLVATGLGASSPGSTSPLGRLQTMQPFEFRRDHSPAPSPETAEKNLTESS PCGSPQNLSSTPTSSQSITPPFTPIKSSESRDHLSPNPMTLPIMPPQDDHVTRALDFTTGKEPSHSPSSIFSDRKLKHLR KSSNPIKRHWNPSPGFGSTLVGPNGKKRVLCTACNKTFCDKGALKIHYSAVHLKEMHKCTVEGCNMMFSSRRSRNRHSAN PNPKLHMPQKRVKLPDGASLIDDGSDKSNRMRAGSPPPTMVMPPTLGPHGTIPPLDAQDLHPASQATFYAEMNAQMSMFP TPEKRIKLDQGDDGPKDLSMPPRREIETKFDNGMAKDDIKSDSPVSQRSMSRRKNNIPTRLAPSEEENNVLSDEEKDGEL KIDTKYSRRRSRIAEAGAMDGLDVDDKLRASSQRYYLNLSMSDDDRMESSSDVSEGFKSVGLPRKDFPKIASLLSRSGVK DLTSQEAIDYTTKFKERKVDYPPSPGSTSDSDDGSNHVGLSNGCTLKNDRIDPDTCSVCGEVFQNAKDLDIHFKTDHLNH TSKEAILNDALNLRRRNVDSGNESHEDMSSDEENFPDNDVGNVQQADDNDTEDEENHCPLNGNKCHAEEDSDDDDDMPQG KELNEICLEENEISVFCHICQSKFKDNLALKEHFEMHHPKETFNCTVTGCEKIFSTRKSRNRHSQNDNLHRHLASGRQNG VS |
|