Gene
| Gene Model ID | pfu_aug1.0_2276.1_44304 |
|---|---|
| Locus | scaffold2276.1 : 57970 ... 61245 : - |
| To GenomeBrowser | scaffold2276.1:57970..61245 |
| Genes list of scaffold | scaffold2276.1 |
| Synonym | pfu_aug2.0_23.1_10124 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_2276.1_44304.t1 | 1 | 1 | zf-RING_2 | 30 | 78 | 1.2e-06 | 28.2 | 1.1e-09 | 1.2e-06 | 28.2 |
| pfu_aug1.0_2276.1_44304.t1 | 1 | 1 | zf-C3HC4 | 31 | 77 | 2.3e-08 | 33.5 | 2.0e-11 | 2.3e-08 | 33.5 |
| pfu_aug1.0_2276.1_44304.t1 | 1 | 1 | zf-C3HC4_2 | 31 | 77 | 1.4e-07 | 31.3 | 1.3e-10 | 1.4e-07 | 31.3 |
| pfu_aug1.0_2276.1_44304.t1 | 2 | 1 | zf-RING_5 | 31 | 78 | 1.6e-06 | 27.7 | 1.4e-09 | 1.6e-06 | 27.7 |
| pfu_aug1.0_2276.1_44304.t1 | 2 | 2 | zf-RING_5 | 118 | 150 | 1.6e-06 | 27.7 | 0.25 | 290.0 | 1.3 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_2276.1_44304.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2276.1_44304.t1 atgctaaacgtctcgaaagtcttccctcgaggtttgaaaatggcatcaacaaaacttgtatcagaaggagataacacgga cgtcacaacctgttctatttgctttgaaactttcaaatttcctaaacattttccttgccttcatagtttttgtgagcagt gcgtcaaaacttacattaccacgtcattagaaacgcgtgagcagaagaagggcgtgaaatgtcccgtgtgtcgggtattt attcataaacctgacaattgcaatgtcgaagattggtccaaaagacttcccacgaaccatgttctagtaaacttgattga catgaataaaacactgtctggttctaagctctgcagtgcttgtgcaagggatagtgagaaggaagttgcacaatcttggt gcttgaattgttgcgaagcactttgtgctgtatgcgtaaaatgccatcggaagagtaaagctactgcgtcacataaattt gttgacatccaaaatgaaggaacggaaatgtccctacaaagtgcggatgtgttctgcacggagcatccaagcaaactcct agaagcgtactgttccgaccattccaaagtatgctgtatgtcttgtgtcatgcttaaacatagaaaatgcaaccatgtgg gttctgttgaagatgctgcaaaggaaaagaagtcatctgtattcacgcaggaaatcgagtgtgctttcagtcaaatgaaa gatgatctggaagtcatgatagaagagagagatgaaaatataaaagcatttgagggaagcattgaacaaatgaaagatga tgccaataaactcttcaaagaaatcagcacgcatatagaatggctgaaatacagagcatttgatgatatttctgcacttc aaaagaagatattgcatgaaattaaggatgacaagcaggatctgcagcacagaatttccgcggtgaaatatcatctagcg ctttttcatacaaatgtaaagtatgcttcaccagctcaattcttaattgcaatggaaaagctgtcagagcagaaagaaat ctgcgaggaattcacagatgagaagaagaatggaaaaagaacggtaattgtaaaatgcaggatggacaaaagcctctcca agatttccaaagaggcaaagaggttccttgcgtacagggttttgagagttcaggcatcaagtctgaaagagccggagctt cttgaaaatattacaacagagggccgattatctgtttctggaatagcttttctgacgaacgactacttgcttgcttccat ctgcggagataagtgcctggagttgtggaatgatcagtacgaacttgtatcaacaataaaattgtccgcaagtccatatg gtgtgaaactgaccaatgacaaggatggtgcagtagttttgtatggtgaagggctgaagtttttcacggttcacgatgat gagttgcgcgagatgaagatgttgaaaatgaaagcatccaatgacttcgtacaagttcagaagaagtactacatttgcag taaaggcaaaatacttgtgtacaacgaccgtaggtactacacgcaacatcttcctgttgctggagacgtatggtatatct gtgccgttgatgatgcaaggctttgctacacgctatacaagggggacaaattgttctgtatcaccttaaagggatctcct gtctttgaatattcgcataaaagattgcttaacacaactggcgttgcagtagacagcaagaaaaacatctatgtctgtgg gtatgacacgaaaaatgttcatcaactcagcaaagatggaaagcttctgaagatcgtgctattcaacattccaggaaggc catggtgcattagcttcaacaaaactggcgagaaagttgccatcggttgcccaagaaaggttctgatttatgaatctaaa gactttgccggctga |
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Protein
| Protein ID | pfu_aug1.0_2276.1_44304.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_2276.1_44304.t1 MLNVSKVFPRGLKMASTKLVSEGDNTDVTTCSICFETFKFPKHFPCLHSFCEQCVKTYITTSLETREQKKGVKCPVCRVF IHKPDNCNVEDWSKRLPTNHVLVNLIDMNKTLSGSKLCSACARDSEKEVAQSWCLNCCEALCAVCVKCHRKSKATASHKF VDIQNEGTEMSLQSADVFCTEHPSKLLEAYCSDHSKVCCMSCVMLKHRKCNHVGSVEDAAKEKKSSVFTQEIECAFSQMK DDLEVMIEERDENIKAFEGSIEQMKDDANKLFKEISTHIEWLKYRAFDDISALQKKILHEIKDDKQDLQHRISAVKYHLA LFHTNVKYASPAQFLIAMEKLSEQKEICEEFTDEKKNGKRTVIVKCRMDKSLSKISKEAKRFLAYRVLRVQASSLKEPEL LENITTEGRLSVSGIAFLTNDYLLASICGDKCLELWNDQYELVSTIKLSASPYGVKLTNDKDGAVVLYGEGLKFFTVHDD ELREMKMLKMKASNDFVQVQKKYYICSKGKILVYNDRRYYTQHLPVAGDVWYICAVDDARLCYTLYKGDKLFCITLKGSP VFEYSHKRLLNTTGVAVDSKKNIYVCGYDTKNVHQLSKDGKLLKIVLFNIPGRPWCISFNKTGEKVAIGCPRKVLIYESK DFAG |
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