Gene
| Gene Model ID | pfu_aug1.0_21959.1_54805 |
|---|---|
| Locus | scaffold21959.1 : 1 ... 6807 : + |
| To GenomeBrowser | scaffold21959.1:1..6807 |
| Genes list of scaffold | scaffold21959.1 |
| Synonym | pfu_aug2.0_2844.1_15643 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_21959.1_54805.t1 | 1 | 1 | RRM_1 | 42 | 112 | 9.9e-24 | 82.7 | 6.8e-27 | 1.7e-23 | 82.0 |
| pfu_aug1.0_21959.1_54805.t1 | 1 | 1 | RRM_6 | 42 | 110 | 3.1e-15 | 55.8 | 2.3e-18 | 5.8e-15 | 55.0 |
| pfu_aug1.0_21959.1_54805.t1 | 1 | 1 | RRM_5 | 57 | 113 | 7.8e-14 | 51.2 | 6.8e-17 | 1.7e-13 | 50.2 |
| pfu_aug1.0_21959.1_54805.t1 | 1 | 1 | RBM39linker | 129 | 219 | 1.3e-22 | 79.8 | 1.1e-24 | 2.7e-21 | 75.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_21959.1_54805.t1 | gi|215820610|ref|NP_001135964.1| | RNA binding motif protein 39 [Nasonia vitripennis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_21959.1_54805.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_21959.1_54805.t1 gataggtttaacgggtcagaaactattaggtgttcccattatagtccaaccatcacaagcagagaagaacagagctgcta acatgggcaatatcacacaaaaaggagccactgggccaatgaggttatacgttggatcattacattttaatataacagaa gatatgctcaggggaatttttgaaccatttgggaagattgatgacatcaaattgattcatgaccacggcacaactagaac gcagggatacgggtttgtcacgtttcataatgctgatgatgccaagaaggccttggagcagttgaacggctttgagctgg caggacgaccaatgaaagtaggtcatgtgacggaacggcagggcgacatacaggcaggttctgtactggacagtgacgag atggatagagctggtatagacctcggtgccacgggtagactgcagctgatggccaaactagcagaaggaacgggctttca gatccctgagtatgcagcgtcagccttaaacatgagtgccaccacaccagcagcggcggcaccaggagttgctgggaacg tgtcagccatcatgggtggccagacagcggcaccgaatgctgcggctccacctatagccacacagtgtttcatgctctcc aatatgtttgatcctacagtcatgcaatccaagcaccgagcagccctcttgcagactgatcagctcaagaaacacaaact tgatagaagacctcgagtacaaggagaagttgaaaatgcatcggcctattggagccctaagcggcctttttctgacaaat tgtctcaaaaataa |
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Protein
| Protein ID | pfu_aug1.0_21959.1_54805.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_21959.1_54805.t1 IGLTGQKLLGVPIIVQPSQAEKNRAANMGNITQKGATGPMRLYVGSLHFNITEDMLRGIFEPFGKIDDIKLIHDHGTTRT QGYGFVTFHNADDAKKALEQLNGFELAGRPMKVGHVTERQGDIQAGSVLDSDEMDRAGIDLGATGRLQLMAKLAEGTGFQ IPEYAASALNMSATTPAAAAPGVAGNVSAIMGGQTAAPNAAAPPIATQCFMLSNMFDPTVMQSKHRAALLQTDQLKKHKL DRRPRVQGEVENASAYWSPKRPFSDKLSQK |
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