Gene
| Gene Model ID | pfu_aug1.0_1824.1_37129 |
|---|---|
| Locus | scaffold1824.1 : 36646 ... 62552 : + |
| To GenomeBrowser | scaffold1824.1:36646..62552 |
| Genes list of scaffold | scaffold1824.1 |
| Synonym | pfu_aug2.0_759.1_31138 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1824.1_37129.t1 | 3 | 1 | SAM_1 | 521 | 583 | 1.6e-28 | 98.6 | 9.9e-10 | 3.7e-06 | 27.0 |
| pfu_aug1.0_1824.1_37129.t1 | 3 | 1 | SAM_2 | 521 | 584 | 1.0e-25 | 89.3 | 6.5e-07 | 0.0024 | 17.6 |
| pfu_aug1.0_1824.1_37129.t1 | 3 | 2 | SAM_1 | 606 | 668 | 1.6e-28 | 98.6 | 3.0e-17 | 1.1e-13 | 51.1 |
| pfu_aug1.0_1824.1_37129.t1 | 3 | 2 | SAM_2 | 613 | 668 | 1.0e-25 | 89.3 | 1.0e-10 | 3.7e-07 | 29.8 |
| pfu_aug1.0_1824.1_37129.t1 | 3 | 3 | SAM_2 | 691 | 751 | 1.0e-25 | 89.3 | 3.8e-13 | 1.4e-09 | 37.6 |
| pfu_aug1.0_1824.1_37129.t1 | 3 | 3 | SAM_1 | 693 | 719 | 1.6e-28 | 98.6 | 1.4e-06 | 0.0054 | 16.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1824.1_37129.t1 | gi|260790363|ref|XP_002590212.1| | hypothetical protein BRAFLDRAFT_128281 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_1824.1_37129.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1824.1_37129.t1 atgaactttttgctcggtgtgttaggacgccataaaaccagttatgaatgtttaattaatgtgcacagaactgtaaaggt acgtgagaggttacgtgtggccttggagagagtagccacgctggaggaggaccttgccaatgccaatcaagagcttttta cattacgtgaaaaggagagtaagtcacggcattccagtggaagtacagaggaaagtttaaaaacactcaaattagacgct atccaacaggaatcagatcatcctaaacctgaacaacatcccaaatctatagctcagcgtgaggaccaagaagagaggat tgcaacattagagaaacgctaccttaatgcacagagggaatctacgtcactccatgatctgaatgataagctagaatcag agcttgctaccaaagaaagccaactcaaatctagtgaagaaaagatgcgtcaggctcaggagaagtttgagttagcagag cagaaactgcagcaatccttaaagaaagtagaggctctacctacagtagaggcagagctggctcagaggttagaggccct gaacaaggcagaggagagacatgggtcagcagaggaacggctcagtcagctagagcagcagctacaggataatgaggcag agctgtctaggtctcggttacgtgagaagatgaatgaggagcataatactcggttgtcatccacggttgacagattatta tcagaatccaatgagaggctgcagcttcatcttaaagaaaggatgcaggctctggaggagaaaaaccagctaactcagga gctggagaggatacgaaaggtgctagacgaaagtcaacaggaaaaggagagaattacagatgatctgatgaggtccaata aggaggtggatacattaaggcagcaaatagaacacttagcaagacctggatcaggatacgtaatacgtagtcctgcagag gaagttcctcgacgttccaatagaggaagggaggcattagatgaagatccaaccaaggttaacaccctgaatgagcagga gtatgagaagttacggcaagcccagattgtgaacagtataaaggatgcgtttgagatgagtgatacagaaggcagcgaga atgagtctgtgatgggtgcgtttgatatgctgtctccgagcggacatacggacgcccagacgctagcactgatgctccag gaacagcttgatgctataaataatgaaatcagtcgaacagtaatagataccacccagtcttcacacagtccgtctggctc ggccaacagcagtcaagactctctacataaaaaccagcagaaaaagaagggcattaagagctcactgggaagactcttca gtaaaaaggaaaaacagaaagccaaagatctcagcagggaaatgctcatgccatctggtgctggtttttctgaccttggt gatggcagcatgactgacgcgttaacgttaggtttaggtcaatcagaatatgacaggcggaaaaagaaaaaacatgagtt gttagaggaagccatgaaagctggtactccatttgctttatggaatggtcctacagtggtggcttggttagagttatggg tgggtatgcctgcatggtatgtagcagcatgtcgagccaatgtcaaaagtggtgcaataatgtcagctttgtccgaccaa gaaatccagcgagaaatcggcatcagtaatcctcttcatcggctaaaattacgactggccatacaggagatggtcagctt aactagtccttcagctcctaaaacctcacgcactacgctggcttttggtgacatgaaccatgagtggataggtaatgaat ggttaccgtctataggtttacctcaatatcgtagccattttatggaatgtttagtcgatgctcggatgctggatcatcta accaaaaaagatctgagaggccaacttaaaatggtcgacagttttcatagaactagtttgcaatatggaataaattgttt aaaaagaataaattatgataaaaaggaactagagagtagaagagaagcatgtgctacagaaactaaggatgttttagtat ggacgaatgagagagttataaaatggatccagtctataggtttaagggaatatgcaaacaatttaatagagtctggagta catggtgctttgatagcactggatgatagttttgatcataatagtatggctctagcactacaaatacccacccaaaatac acaagcacgtcactgcctagatgtagaattcgtgaatttattatcactaggcacagatcgccgattggacgaggtaggtc agttgtctatttacgttttatttttgctccgtcgtatcatgttggtgattgttgtacagaatgacagaaactccttcttc ctgcatcgtatgtataaatga |
|
Protein
| Protein ID | pfu_aug1.0_1824.1_37129.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1824.1_37129.t1 MNFLLGVLGRHKTSYECLINVHRTVKVRERLRVALERVATLEEDLANANQELFTLREKESKSRHSSGSTEESLKTLKLDA IQQESDHPKPEQHPKSIAQREDQEERIATLEKRYLNAQRESTSLHDLNDKLESELATKESQLKSSEEKMRQAQEKFELAE QKLQQSLKKVEALPTVEAELAQRLEALNKAEERHGSAEERLSQLEQQLQDNEAELSRSRLREKMNEEHNTRLSSTVDRLL SESNERLQLHLKERMQALEEKNQLTQELERIRKVLDESQQEKERITDDLMRSNKEVDTLRQQIEHLARPGSGYVIRSPAE EVPRRSNRGREALDEDPTKVNTLNEQEYEKLRQAQIVNSIKDAFEMSDTEGSENESVMGAFDMLSPSGHTDAQTLALMLQ EQLDAINNEISRTVIDTTQSSHSPSGSANSSQDSLHKNQQKKKGIKSSLGRLFSKKEKQKAKDLSREMLMPSGAGFSDLG DGSMTDALTLGLGQSEYDRRKKKKHELLEEAMKAGTPFALWNGPTVVAWLELWVGMPAWYVAACRANVKSGAIMSALSDQ EIQREIGISNPLHRLKLRLAIQEMVSLTSPSAPKTSRTTLAFGDMNHEWIGNEWLPSIGLPQYRSHFMECLVDARMLDHL TKKDLRGQLKMVDSFHRTSLQYGINCLKRINYDKKELESRREACATETKDVLVWTNERVIKWIQSIGLREYANNLIESGV HGALIALDDSFDHNSMALALQIPTQNTQARHCLDVEFVNLLSLGTDRRLDEVGQLSIYVLFLLRRIMLVIVVQNDRNSFF LHRMYK |
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