Gene
| Gene Model ID | pfu_aug1.0_17876.1_47138 |
|---|---|
| Locus | scaffold17876.1 : 1 ... 7995 : - |
| To GenomeBrowser | scaffold17876.1:1..7995 |
| Genes list of scaffold | scaffold17876.1 |
| Synonym | pfu_aug2.0_129.1_30266 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_17876.1_47138.t1 | 2 | 1 | Aminotran_1_2 | 21 | 108 | 0.0 | 188.2 | 3.9e-17 | 5.8e-13 | 48.5 |
| pfu_aug1.0_17876.1_47138.t1 | 2 | 2 | Aminotran_1_2 | 104 | 275 | 0.0 | 188.2 | 2.8026e-45 | 5.19994e-41 | 140.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_17876.1_47138.t1 | gi|338191582|gb|AEI84593.1| | mitochondrial aspartate transaminase [Tigriopus californicus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 4 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_17876.1_47138.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_17876.1_47138.t1 atggggcctccagacgctatcttaggtattacagaggcctacaaaagggatgacaatcctagtaaaattaaccttggtgt gggagcatacagaaatgatagtggcaaaccatatgttttagaatgtgtcaaaaaggcagaaaaaatgatgctggaaaaag gattagataaagagtacgccccgatcagtggtcctcctgaattctgccgagaggctgctaagttggcattcggagatgac agctcggtactaaaggaaggcaggaatgtgacagtgcagggagtttcagggaccgggtccttaagaattggtgcagcttt ctttcccgagcagtggaaagaaatgagccagttaataaagaaaaggaagttatatcccttctttgacatggcataccaag gttttgctagcggggatatcaacaaagacgcggcagctctgcggacatttatagacgacgggcatgaggtggccctggcc cagtcttttgccaagaatatgggattatatggtgagagagccggtgcttttaccatcgtgtgtgcttccaaggaggaggc agatagagttatgtcccaagtcaaaattctcatccgtccattatattccaatcctcccattcatggttctcgtatagtag ccacagttctcactgaccctactctaaggcagatgtggttgggagaggttaaaggaatggcagatagaataataaacatg agaagcaagttggtggagggactgcaaaaagaagggtcaacaaggaactggcagcatataacagaccagatagggatgtt ctgtttcaccggcctcaaaccagaacaggtatga |
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Protein
| Protein ID | pfu_aug1.0_17876.1_47138.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_17876.1_47138.t1 MGPPDAILGITEAYKRDDNPSKINLGVGAYRNDSGKPYVLECVKKAEKMMLEKGLDKEYAPISGPPEFCREAAKLAFGDD SSVLKEGRNVTVQGVSGTGSLRIGAAFFPEQWKEMSQLIKKRKLYPFFDMAYQGFASGDINKDAAALRTFIDDGHEVALA QSFAKNMGLYGERAGAFTIVCASKEEADRVMSQVKILIRPLYSNPPIHGSRIVATVLTDPTLRQMWLGEVKGMADRIINM RSKLVEGLQKEGSTRNWQHITDQIGMFCFTGLKPEQV |
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