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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_1706.1_08075
Locus scaffold1706.1 : 58196 ... 64905 : -
To GenomeBrowser scaffold1706.1:58196..64905
Genes list of scaffold scaffold1706.1
Synonym NA

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_1706.1_08075.t1 2 1 zf-B_box 5 53 5.3e-10 39.0 1.6e-08 9.6e-06 25.3
pfu_aug1.0_1706.1_08075.t1 2 2 zf-B_box 67 113 5.3e-10 39.0 1.3e-06 0.00083 19.1
pfu_aug1.0_1706.1_08075.t1 1 1 fn3 156 236 1.7e-09 37.6 5.7e-12 3.5e-09 36.6

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_1706.1_08075.t1 gi|348543045|ref|XP_003458994.1| PREDICTED: uncharacterized protein LOC100702146 isoform X1 [Oreochromis niloticus] 1.0e-18

Transcript
Transcript IDpfu_aug1.0_1706.1_08075.t1
Definition-
>pfu_aug1.0_1706.1_08075.t1
atgaaaagagagcagaaggtcaaatgcgacacttgtaaggccttgggaagcgataccgatgctacatcattttgcaatga
ttgcgatgaatatctatgcattaaatgtactcgacatcaccaagctatgaaactgaccaaggaccacaaattggtttctg
cagaggagaaacgtgacggtttgcatggagaggaagcatttaattgtgagccttgtgaaagtctcgaagaaagcgtacag
gcaactgcatactgcaaggactgcaatgaacatctttgcgatggttgccaaaaaagacacaaggcaatgaaattgacaaa
aactcatatagtgataacgatagagcagtttctagagatgagaaagtctggaaatactgttttgaacgatcttagcaagg
agaacggggaggcaggaattgaaaaagattcatctcaaaaggaagagacaaagttagatcaaactcctggaaagcctgtt
gcacgaaaagtaaaatctgacagtataaccctttcatggagacttccaaatgacttccaagagggtgactactatcaaat
ccgttttaaaaatattgatggaggaaaatggcgtttttacgaggaacaaccatcagagggaaccatagttatgacaaaaa
tgaaagctaacacaaaatttgtgttccaagtcagagtggtccatgatgatatggagggcccatatagtcccgtcagtgac
gaggtgcacaccaaattatcaccggcaaataggctttttaattactcaactttgacacgaaaaggaactcctgaccttta
tcgattaccattgaccgagaacaaaaatgcaagaaacagtggagtaaaaactagaaaatttgatcttggagcacccccga
aaagaggaaaagagaaaaccatcatgcttgttggggctacaggaaccggtaaaagcacacttgtagatggtttagtcaac
tacgtgttaggagtcaactgggacgatagttttcgatacacccttgttgatctagaaaaagaggagagatccaaacagca
caaccagcatttcagaacaattataatacaacagattcgccatccttatcataggaacttcatgtacacattggaatatg
caaattgctttgctcaatataaaaaaaacacttctgtacggattatgaaaatagatctgcagttcgccgtcggttttgac
tttcctgtgtag

Protein
Protein IDpfu_aug1.0_1706.1_08075.t1
Definition-
>pfu_aug1.0_1706.1_08075.t1
MKREQKVKCDTCKALGSDTDATSFCNDCDEYLCIKCTRHHQAMKLTKDHKLVSAEEKRDGLHGEEAFNCEPCESLEESVQ
ATAYCKDCNEHLCDGCQKRHKAMKLTKTHIVITIEQFLEMRKSGNTVLNDLSKENGEAGIEKDSSQKEETKLDQTPGKPV
ARKVKSDSITLSWRLPNDFQEGDYYQIRFKNIDGGKWRFYEEQPSEGTIVMTKMKANTKFVFQVRVVHDDMEGPYSPVSD
EVHTKLSPANRLFNYSTLTRKGTPDLYRLPLTENKNARNSGVKTRKFDLGAPPKRGKEKTIMLVGATGTGKSTLVDGLVN
YVLGVNWDDSFRYTLVDLEKEERSKQHNQHFRTIIIQQIRHPYHRNFMYTLEYANCFAQYKKNTSVRIMKIDLQFAVGFD
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