Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_17054.1_47052
Locus scaffold17054.1 : 311 ... 4275 : -
To GenomeBrowser scaffold17054.1:311..4275
Genes list of scaffold scaffold17054.1
Synonym pfu_aug2.0_87.1_23421

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_17054.1_47052.t1 3 1 Ank_2 15 57 1.6e-12 47.5 0.00094 2.3 8.5
pfu_aug1.0_17054.1_47052.t1 3 1 Ank_4 17 53 8.3e-07 29.3 0.0087 22.0 5.7
pfu_aug1.0_17054.1_47052.t1 3 2 Ank_2 18 114 1.6e-12 47.5 7.6e-10 1.9e-06 28.1
pfu_aug1.0_17054.1_47052.t1 4 1 Ank_5 21 42 1.1e-06 28.6 0.76 1900.0 -0.7
pfu_aug1.0_17054.1_47052.t1 3 2 Ank_4 68 108 8.3e-07 29.3 7.7e-07 0.0019 18.6
pfu_aug1.0_17054.1_47052.t1 4 2 Ank_5 78 108 1.1e-06 28.6 1.8e-06 0.0044 17.2
pfu_aug1.0_17054.1_47052.t1 3 3 Ank_2 184 267 1.6e-12 47.5 2.0e-06 0.0049 17.1
pfu_aug1.0_17054.1_47052.t1 4 3 Ank_5 204 229 1.1e-06 28.6 0.021 52.0 4.2
pfu_aug1.0_17054.1_47052.t1 3 3 Ank_4 249 261 8.3e-07 29.3 0.56 1400.0 -0.1
pfu_aug1.0_17054.1_47052.t1 4 4 Ank_5 249 261 1.1e-06 28.6 0.15 360.0 1.6

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
>Adult tissues

Transcript
Transcript IDpfu_aug1.0_17054.1_47052.t1
Definition-
>pfu_aug1.0_17054.1_47052.t1
atgaactctatcacagaggaagaattcgacagtgattttgtggcaacgagactattttcggctataagagaccaggattt
acgttctgtaaagatgtgtataaaagccagggacaatgtgaacgtaaggtgccgtaagaccggtatgacgtacgtgcatc
ttaccgttaaaacggctctccctatatcagaggtcaaatatgtgccaatcatacaccagctttcaaatgccgacatagat
ttaaatgcaaaagacaaaaacggaacgactgcgctctatttatcaatagaaaggcaacttctagaggtaatggcagcact
tctacgttgtggtgctcattttcaaccaaatgccgaagaggaagtgttttcgtgtttgcgtggtccatttgtgtatgaga
ttttgaacagatacaaaagtttctccccgggatactgggacgcattgagggacggtaaggcattccgggtgaatgtatta
gtcaaatcatggtgcagaattaatatatccagacatggaataactttaatagaatatgcaaaacagaaaaacgcgagtga
aaaagttgtgaggcaattgatagacaacgaggcaacaattgaatttgcacatgcaactattgcaggtgactgtgagaaaa
tgcgacatttacttttgcactaccctgtagatctttcaacaaccgacctttcccatcgggaaaacttttttgaaccatat
tctccactgactttgcaaggagctgcaatcaaatatggtcataaagatgcactttcgattttgaaggaagcggaagttaa
caggcaatcacaaaccgaaaaggatacagttaaatcgtctgttatatgttctatttcttga

Protein
Protein IDpfu_aug1.0_17054.1_47052.t1
Definition-
>pfu_aug1.0_17054.1_47052.t1
MNSITEEEFDSDFVATRLFSAIRDQDLRSVKMCIKARDNVNVRCRKTGMTYVHLTVKTALPISEVKYVPIIHQLSNADID
LNAKDKNGTTALYLSIERQLLEVMAALLRCGAHFQPNAEEEVFSCLRGPFVYEILNRYKSFSPGYWDALRDGKAFRVNVL
VKSWCRINISRHGITLIEYAKQKNASEKVVRQLIDNEATIEFAHATIAGDCEKMRHLLLHYPVDLSTTDLSHRENFFEPY
SPLTLQGAAIKYGHKDALSILKEAEVNRQSQTEKDTVKSSVICSIS

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495