Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_1585.1_29775
Locus scaffold1585.1 : 12496 ... 32907 : +
To GenomeBrowser scaffold1585.1:12496..32907
Genes list of scaffold scaffold1585.1
Synonym pfu_aug2.0_170.1_00359

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_1585.1_29775.t1 2 1 Asparaginase 32 235 0.0 203.9 0.0 1.4013e-43 148.9
pfu_aug1.0_1585.1_29775.t1 2 2 Asparaginase 234 299 0.0 203.9 3.0e-19 4.4e-15 55.3

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_1585.1_29775.t1 gi|270009719|gb|EFA06167.1| hypothetical protein TcasGA2_TC009014 [Tribolium castaneum] 2.0e-34

Transcript
Transcript IDpfu_aug1.0_1585.1_29775.t1
Definition-
>pfu_aug1.0_1585.1_29775.t1
atgtctcaagttagcgatgttgcagagacagaaaatcaagcagaagctatcgccaaagccaaggcagctgattctgaagt
agaacctgtatctagagtcttagttctatacactggcggtaccattggcatgaaatctaatccaaatggagtttacgaac
caaaggagaactacctgttaaatgagttgaagaagttacctatgttccatgataaagagtatgctgactctcagaacttt
gataatgaggacacattggccatgcctctcggtcatggtacggagagaggaaatacccatgacggagaagatccaaggtt
tgatattgtttttgtggcatattgtacatattccagcttctggttctttggaataaaatttcagatctgcaggtccttta
catcatcggacatcatggtcaatacaactcaaacaaataaccttgacttttatgagaaagatctcagataccacagaggc
aagaggatactgtatttggtgaaggagtatgtccctctactggactccagtaatatgatgatgaaggactgggcacatat
agccacggatatatctaaccattatacagagtatgatggatttgtggtattgcatggtacagatacaatggcttatactg
cctcagcattgtcatttatgtgtgaaaatttggggaaacccattattctcactggctctcaggtaagagggttcctgcgt
cctcccatgcaaggtgtgatcttacagacgtacggggcaggtaatgccccagataaccgtccagacctacatcaggtgtt
taaggaggcatctaacataggtgtcatcatcatcaacatatcacagtgtccacggggaaacgtcagtacttcatatgcca
ctggaaaggctgtcgcatgtttgaagttgaaggctgtagagttcctactggacagtggagcttgttggagagtacaggat
atatttggtaactcggcggaatcctttgccagtgacaaggggtacactgagctccatgtggatgcttaccggtaa

Protein
Protein IDpfu_aug1.0_1585.1_29775.t1
Definition-
>pfu_aug1.0_1585.1_29775.t1
MSQVSDVAETENQAEAIAKAKAADSEVEPVSRVLVLYTGGTIGMKSNPNGVYEPKENYLLNELKKLPMFHDKEYADSQNF
DNEDTLAMPLGHGTERGNTHDGEDPRFDIVFVAYCTYSSFWFFGIKFQICRSFTSSDIMVNTTQTNNLDFYEKDLRYHRG
KRILYLVKEYVPLLDSSNMMMKDWAHIATDISNHYTEYDGFVVLHGTDTMAYTASALSFMCENLGKPIILTGSQVRGFLR
PPMQGVILQTYGAGNAPDNRPDLHQVFKEASNIGVIIINISQCPRGNVSTSYATGKAVACLKLKAVEFLLDSGACWRVQD
IFGNSAESFASDKGYTELHVDAYR

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495