Gene
| Gene Model ID | pfu_aug1.0_15835.1_39747 |
|---|---|
| Locus | scaffold15835.1 : 1 ... 2632 : + |
| To GenomeBrowser | scaffold15835.1:1..2632 |
| Genes list of scaffold | scaffold15835.1 |
| Synonym | pfu_aug2.0_10588.1_29704 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_15835.1_39747.t1 | 5 | 1 | zf-CCCH | 25 | 47 | 6.5e-21 | 73.5 | 2.6e-11 | 7.8e-08 | 31.8 |
| pfu_aug1.0_15835.1_39747.t1 | 5 | 2 | zf-CCCH | 50 | 71 | 6.5e-21 | 73.5 | 0.00012 | 0.35 | 10.6 |
| pfu_aug1.0_15835.1_39747.t1 | 5 | 3 | zf-CCCH | 76 | 98 | 6.5e-21 | 73.5 | 1.7e-07 | 0.00051 | 19.6 |
| pfu_aug1.0_15835.1_39747.t1 | 5 | 4 | zf-CCCH | 105 | 122 | 6.5e-21 | 73.5 | 0.00058 | 1.7 | 8.4 |
| pfu_aug1.0_15835.1_39747.t1 | 5 | 5 | zf-CCCH | 126 | 145 | 6.5e-21 | 73.5 | 5.6e-08 | 0.00017 | 21.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_15835.1_39747.t1 | gi|345316516|ref|XP_001518934.2| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
| mantle | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_15835.1_39747.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_15835.1_39747.t1 ccaagtcctacatagaagtattcgtacagctacggctaagttcaggaaggacaatacaaaactagcacagaaatattgta aatactacaacaggtttgggagatgtaggcgaggggatcagtgtcagtatatacatgatcctacaaagattgcggtctgt acaagattcttaaggggaacttgtaacatcacggactgtccattctcacataatgtcaacaaagacaaaatgcccgtgtg ttcgtactacttgaagggcgtgtgtaatcgtgacaactgtccgtatctacatgtaaacgtggacaggaatgctgaaatct gtacagactttgttaatggattttgtccgttaggaatgaagtgcaagaagaaacacacaaggatttgccctaacttctcc agaactgggaagtgtcctgagggaaaaaaatgcaagttaatacatcagtcaaagaagcggaggagaaattcctcacaagg caaaaatgatggtgaaaggtacatgtattga |
|
Protein
| Protein ID | pfu_aug1.0_15835.1_39747.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_15835.1_39747.t1 QVLHRSIRTATAKFRKDNTKLAQKYCKYYNRFGRCRRGDQCQYIHDPTKIAVCTRFLRGTCNITDCPFSHNVNKDKMPVC SYYLKGVCNRDNCPYLHVNVDRNAEICTDFVNGFCPLGMKCKKKHTRICPNFSRTGKCPEGKKCKLIHQSKKRRRNSSQG KNDGERYMY |
|