Gene
| Gene Model ID | pfu_aug1.0_15170.1_39668 |
|---|---|
| Locus | scaffold15170.1 : 1 ... 21995 : - |
| To GenomeBrowser | scaffold15170.1:1..21995 |
| Genes list of scaffold | scaffold15170.1 |
| Synonym | pfu_aug2.0_8320.1_02965 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_15170.1_39668.t1 | 3 | 1 | Ig_2 | 20 | 42 | 2.3e-21 | 75.7 | 0.00023 | 0.49 | 10.5 |
| pfu_aug1.0_15170.1_39668.t1 | 3 | 1 | V-set | 25 | 51 | 1.1e-08 | 34.9 | 0.0013 | 2.7 | 7.9 |
| pfu_aug1.0_15170.1_39668.t1 | 3 | 1 | I-set | 25 | 45 | 1.0e-11 | 44.5 | 0.0092 | 19.0 | 5.1 |
| pfu_aug1.0_15170.1_39668.t1 | 3 | 1 | ig | 26 | 34 | 1.8e-06 | 27.9 | 0.19 | 400.0 | 1.2 |
| pfu_aug1.0_15170.1_39668.t1 | 2 | 1 | Ig_3 | 161 | 228 | 1.9e-11 | 44.2 | 2.0e-11 | 4.3e-08 | 33.5 |
| pfu_aug1.0_15170.1_39668.t1 | 3 | 2 | I-set | 161 | 235 | 1.0e-11 | 44.5 | 1.6e-07 | 0.00034 | 20.4 |
| pfu_aug1.0_15170.1_39668.t1 | 3 | 2 | Ig_2 | 164 | 242 | 2.3e-21 | 75.7 | 5.8e-13 | 1.2e-09 | 38.1 |
| pfu_aug1.0_15170.1_39668.t1 | 3 | 2 | ig | 175 | 226 | 1.8e-06 | 27.9 | 1.4e-06 | 0.0029 | 17.6 |
| pfu_aug1.0_15170.1_39668.t1 | 3 | 2 | V-set | 202 | 232 | 1.1e-08 | 34.9 | 0.00019 | 0.4 | 10.5 |
| pfu_aug1.0_15170.1_39668.t1 | 3 | 3 | I-set | 247 | 312 | 1.0e-11 | 44.5 | 1.9e-05 | 0.04 | 13.7 |
| pfu_aug1.0_15170.1_39668.t1 | 2 | 2 | Ig_3 | 248 | 311 | 1.9e-11 | 44.2 | 3.2e-05 | 0.068 | 13.6 |
| pfu_aug1.0_15170.1_39668.t1 | 3 | 3 | V-set | 250 | 284 | 1.1e-08 | 34.9 | 0.0005 | 1.1 | 9.2 |
| pfu_aug1.0_15170.1_39668.t1 | 3 | 3 | Ig_2 | 255 | 328 | 2.3e-21 | 75.7 | 8.9e-09 | 1.9e-05 | 24.7 |
| pfu_aug1.0_15170.1_39668.t1 | 3 | 3 | ig | 259 | 291 | 1.8e-06 | 27.9 | 0.0026 | 5.4 | 7.2 |
| pfu_aug1.0_15170.1_39668.t1 | 1 | 1 | Peptidase_C14 | 345 | 402 | 6.1e-08 | 32.6 | 4.6e-11 | 9.8e-08 | 31.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_15170.1_39668.t1 | gi|348535646|ref|XP_003455310.1| | PREDICTED: mucosa-associated lymphoid tissue lymphoma translocation protein 1 isoform X1 [Oreochromis niloticus] | 1.0e-23 |
Transcript
| Transcript ID | pfu_aug1.0_15170.1_39668.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_15170.1_39668.t1 atggacagcttatggggatctggagtccgtttaaatgcttggcggttttggtccgtgaaaaacatgaattgagtaagtga ttcaggaacctattgctgtaggcttcacaatggtcagggagactcacaggtccacttcagtgaagaagctgtcgtaatag tggagaaaaatccagtaacaacagagttgtacttcactgaaatagaaataattctaattgttttatttatagatgacaga gctgtcaatcatgaccgtctacatcccatagacagatgtaaaaatcaaacagacttttaccgtcaacatgatattgatcc cgagaaagaattgtacttcactgatacagaacagattctaattgttttatttatagatgacagagctgtcaatcatgacc gtctacatcccatagacagatgtaaaaatcaaacagacttttaccgtcaacatgatatcgatcctgagaaagcacgccta ccatacatccttgaacatcctcgctgcacacaactcacactcggcgacacactggttctgaactgtgtctctctaggaca ggttcctttggtatatgaatggtacaaagacaggagaccatatggacagtcacatgactcatatataaagatccctggag tgctgttaagccatagtggtgtgtacaagtgtattgtaaggaacacattcggagaacaacacagtgatgatgccattgtt acagttacagagatagagattatcagcaatcctaagacgtgtacagtggagtttggaggaaatgccgtgtttacatgcga ggccagatgtaggggagagcagctcagatataaatggtttaaagacggagtagaactacctggtgagaccaagtgtgagc tccgcctatataacctacaggacatggacaaacagggagtttatcaatgttccgttatagctccgtcatctcaccgtcag cgactcacaaatcctgccacattgtcaatcaaatataacccactaagaccaccagaatttaaccccacagacaaggttgc cctgctcattggtaactatgactacatacatgaatctaagctcaaagctccaaaggcagatgtattaactatgtcagaaa tattccgtagtttagacttcaaagttgtttccttgttaaatcttacaaagactgagatgttatcagccgtggatgaattc tcagaactgttaggacgtgaagtttacgaaaagccagagaagcaactaatagagattcctgatctgctaatgttgataga gctagagttccagtctgagttttctaatgtccttcatgttattacaacagtgaagaggaatggagtaacagctaaagcca taggttatataggacacctgccttctagtgtgtctacgctagatgagcaaccaaagataatatccactaaccctatgagg accaagacgaccctgtatgacatgcagaaattgacggatgacctttggatctcagttcagatcagatacaacaaggttct ggataacggacagctcagtccagatttgtgccatgataagaccagagttaacttgaaactccccctggtggcagttttaa tgctctggaagcttcggggaagtgaggcaatggaacatgaggagaatgattataaatatacaggattatcgtctgcgtca tccatgacaaacagcatgtag |
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Protein
| Protein ID | pfu_aug1.0_15170.1_39668.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_15170.1_39668.t1 MDSLWGSGVRLNAWRFWSVKNMNXVSDSGTYCCRLHNGQGDSQVHFSEEAVVIVEKNPVTTELYFTEIEIILIVLFIDDR AVNHDRLHPIDRCKNQTDFYRQHDIDPEKELYFTDTEQILIVLFIDDRAVNHDRLHPIDRCKNQTDFYRQHDIDPEKARL PYILEHPRCTQLTLGDTLVLNCVSLGQVPLVYEWYKDRRPYGQSHDSYIKIPGVLLSHSGVYKCIVRNTFGEQHSDDAIV TVTEIEIISNPKTCTVEFGGNAVFTCEARCRGEQLRYKWFKDGVELPGETKCELRLYNLQDMDKQGVYQCSVIAPSSHRQ RLTNPATLSIKYNPLRPPEFNPTDKVALLIGNYDYIHESKLKAPKADVLTMSEIFRSLDFKVVSLLNLTKTEMLSAVDEF SELLGREVYEKPEKQLIEIPDLLMLIELEFQSEFSNVLHVITTVKRNGVTAKAIGYIGHLPSSVSTLDEQPKIISTNPMR TKTTLYDMQKLTDDLWISVQIRYNKVLDNGQLSPDLCHDKTRVNLKLPLVAVLMLWKLRGSEAMEHEENDYKYTGLSSAS SMTNSM |
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