Gene
| Gene Model ID | pfu_aug1.0_14866.1_18169 |
|---|---|
| Locus | scaffold14866.1 : 15198 ... 18595 : - |
| To GenomeBrowser | scaffold14866.1:15198..18595 |
| Genes list of scaffold | scaffold14866.1 |
| Synonym | pfu_aug2.0_23.1_10112 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_14866.1_18169.t1 | 3 | 1 | WD40 | 17 | 31 | 2.1e-09 | 36.8 | 0.089 | 1300.0 | -0.6 |
| pfu_aug1.0_14866.1_18169.t1 | 3 | 2 | WD40 | 70 | 96 | 2.1e-09 | 36.8 | 1.9e-09 | 2.8e-05 | 23.8 |
| pfu_aug1.0_14866.1_18169.t1 | 3 | 3 | WD40 | 112 | 129 | 2.1e-09 | 36.8 | 3.4e-05 | 0.51 | 10.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_14866.1_18169.t1 | gi|260826716|ref|XP_002608311.1| | hypothetical protein BRAFLDRAFT_125481 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| egg-4cell | 2 |
| 8-16cell | 1 |
| egg-Dshape | 2 |
| trochophore | 1 |
| >Adult tissues | |
| maleGonad | 1 |
| pearlSac | 3 |
Transcript
| Transcript ID | pfu_aug1.0_14866.1_18169.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_14866.1_18169.t1 atgggatacgtacaacaaagacgagaatccagcctcaaataccaaacacgatgtatcagatgcttccctaataaacaagg atatgtactcagctctattgaaggtcgagtagcagtggagtacttagatccaagtccggaagtacagaagaagaagtacg cttttaaatgtcatcgaatcaaagaggagggagtggaatacatctaccctgtcaacgctatcgctttccacaatcttcat aacacgttcgcatctggagggtcggacggcttcgtgaacatctgggatggcttcaacaagaaacggctctgtcaattcca caaatatccaaccagcattgcctcccttgcgtttagcccagatggcagtgtgttagcgatagcatcttcctacatgtacg agcaggacgagatagacgatattccagaggacacgatttacatacgtaacgtcagtgaccaagaaacgaaaccaaaatcg tga |
|
Protein
| Protein ID | pfu_aug1.0_14866.1_18169.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_14866.1_18169.t1 MGYVQQRRESSLKYQTRCIRCFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRIKEEGVEYIYPVNAIAFHNLH NTFASGGSDGFVNIWDGFNKKRLCQFHKYPTSIASLAFSPDGSVLAIASSYMYEQDEIDDIPEDTIYIRNVSDQETKPKS |
|