Gene
| Gene Model ID | pfu_aug1.0_13284.1_32308 |
|---|---|
| Locus | scaffold13284.1 : 19136 ... 29656 : + |
| To GenomeBrowser | scaffold13284.1:19136..29656 |
| Genes list of scaffold | scaffold13284.1 |
| Synonym | pfu_aug2.0_1313.1_11587 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_13284.1_32308.t1 | 3 | 1 | SHIPPO-rpt | 31 | 52 | 2.3e-13 | 50.3 | 0.0023 | 34.0 | 5.5 |
| pfu_aug1.0_13284.1_32308.t1 | 3 | 2 | SHIPPO-rpt | 63 | 91 | 2.3e-13 | 50.3 | 4.2e-09 | 6.2e-05 | 23.6 |
| pfu_aug1.0_13284.1_32308.t1 | 3 | 3 | SHIPPO-rpt | 100 | 127 | 2.3e-13 | 50.3 | 1.9e-09 | 2.8e-05 | 24.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_13284.1_32308.t1 | gi|260825730|ref|XP_002607819.1| | hypothetical protein BRAFLDRAFT_275083 [Branchiostoma floridae] | 2.0e-36 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_13284.1_32308.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_13284.1_32308.t1 atgaaaaaaaatttaaatattttaactctcaatgtaattttgatttttatcttcttttcagctcctaacaactatacatt aacacaaatgttgggtaaaaccacagacagtggtaagcctcaggctcccatcttctccttgtcaggaaggcaaaagcagg gtggtttccatgaggatttagccaagacccctggacctggaacttacaacactaccgagcctaatctatacagagacaaa gctcccctgtacagtatgacgagcagaaacgttatgccaggagataccacgcgtaaaccaggacctggagctcactcacc agaaaacgtctggatgcataaacgaaagaagcctgaatattccttcggaatccgtcacagtcaatatctggctccactca tcgtggaagttaacgattaa |
|
Protein
| Protein ID | pfu_aug1.0_13284.1_32308.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_13284.1_32308.t1 MKKNLNILTLNVILIFIFFSAPNNYTLTQMLGKTTDSGKPQAPIFSLSGRQKQGGFHEDLAKTPGPGTYNTTEPNLYRDK APLYSMTSRNVMPGDTTRKPGPGAHSPENVWMHKRKKPEYSFGIRHSQYLAPLIVEVND |
|