Gene
| Gene Model ID | pfu_aug1.0_12842.1_25092 |
|---|---|
| Locus | scaffold12842.1 : 1 ... 4982 : + |
| To GenomeBrowser | scaffold12842.1:1..4982 |
| Genes list of scaffold | scaffold12842.1 |
| Synonym | pfu_aug2.0_474.1_14198 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_12842.1_25092.t1 | 6 | 1 | LRR_6 | 56 | 66 | 1.7e-07 | 30.5 | 0.058 | 220.0 | 2.4 |
| pfu_aug1.0_12842.1_25092.t1 | 6 | 2 | LRR_6 | 82 | 104 | 1.7e-07 | 30.5 | 0.00027 | 0.98 | 9.6 |
| pfu_aug1.0_12842.1_25092.t1 | 6 | 3 | LRR_6 | 107 | 131 | 1.7e-07 | 30.5 | 1.7e-06 | 0.0063 | 16.4 |
| pfu_aug1.0_12842.1_25092.t1 | 6 | 4 | LRR_6 | 134 | 152 | 1.7e-07 | 30.5 | 0.22 | 800.0 | 0.6 |
| pfu_aug1.0_12842.1_25092.t1 | 6 | 5 | LRR_6 | 305 | 326 | 1.7e-07 | 30.5 | 0.0028 | 10.0 | 6.5 |
| pfu_aug1.0_12842.1_25092.t1 | 6 | 6 | LRR_6 | 404 | 415 | 1.7e-07 | 30.5 | 0.4 | 1500.0 | -0.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_12842.1_25092.t1 | gi|260825915|ref|XP_002607911.1| | hypothetical protein BRAFLDRAFT_74861 [Branchiostoma floridae] | 3.0e-33 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_12842.1_25092.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12842.1_25092.t1 ccagtgaattgacagaattgctgatcacagaactacatgagaggaaacttctgaaagccaaacattttccgctacttttc cacgatgcggtacagaaactggaattgcaatattgtctgtgtaatctatacaaacaagataatttagtgcagaccatacc atggagatgcccaaggttagtgcacctgaatcttaacaacttgagtcgcctgtccaagacaacattttatggtctggtag agaatctaccaaaactggagtcattaagtttggagaacacaaaatgcaccgatgatatactacatagtataggtttatac tgcaaaagacttgtttctcttaatctacagaactgtagcagtattactgatagaggagtcaagtttctgtgtgagaatac attgccaaatctgcataatgtaaatctaatcaacacaaaagtcacgcttcgcggagttgttgactttatcacaaaatatc ctaacttatttgagttacagcacacaaattctatcatggcattttatgacgcatatcagaaaatgagttctggtgcaaat gataccaaaatcaagcatgatcaaaggaaggttcgatcgttacgatattctcacggagcttacatggacggaaaagaaga aactctaactacagagatgttagaagtcgtttgtaaattctgtcctcttgttactcatgttgaactttatgctatcggaa acaatagtaatatacttgcttttgaacatctgaaacagttacataggttagaaattgtatcagaacatttgtatgacgat tttcaaattgattttaaggggctctgtaatttactcagcattattggaagtcaaatttccgagcttatattaagtggaat ggcagtatattcattagaaatgattggaaacctatgtcctaatttacatgttttagaaatttcagattgttatgatgctg acattttagacaaaggcctagttatggaaaacaaggaatgttttaggaaattacggaacttctgtatcagggacaatgct cctaagggaaaattttcttttcacgaacaaagttttcacactttatttgaaaggtcagaacttttgcagcaattagaaat gtggaatgttaatactttttcaactgagacacttgaaaatgcgatatcaaagcattcttttcagtacctaaaatctatga cacttcatgaatgtaacaatatagatggcgaggggatctttagcttacttcagacagaaaatgacctgagtatgttggtt tcacatcaatgtcactgtgtggataggagagattaccatagataccaaagattttgtagtcagcagaatttagacattac tattagttggacttag |
|
Protein
| Protein ID | pfu_aug1.0_12842.1_25092.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12842.1_25092.t1 SELTELLITELHERKLLKAKHFPLLFHDAVQKLELQYCLCNLYKQDNLVQTIPWRCPRLVHLNLNNLSRLSKTTFYGLVE NLPKLESLSLENTKCTDDILHSIGLYCKRLVSLNLQNCSSITDRGVKFLCENTLPNLHNVNLINTKVTLRGVVDFITKYP NLFELQHTNSIMAFYDAYQKMSSGANDTKIKHDQRKVRSLRYSHGAYMDGKEETLTTEMLEVVCKFCPLVTHVELYAIGN NSNILAFEHLKQLHRLEIVSEHLYDDFQIDFKGLCNLLSIIGSQISELILSGMAVYSLEMIGNLCPNLHVLEISDCYDAD ILDKGLVMENKECFRKLRNFCIRDNAPKGKFSFHEQSFHTLFERSELLQQLEMWNVNTFSTETLENAISKHSFQYLKSMT LHECNNIDGEGIFSLLQTENDLSMLVSHQCHCVDRRDYHRYQRFCSQQNLDITISWT |
|