Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_12153.1_10417
Locus scaffold12153.1 : 8899 ... 14175 : -
To GenomeBrowser scaffold12153.1:8899..14175
Genes list of scaffold scaffold12153.1
Synonym pfu_aug2.0_1524.1_15081

Manual annotation
Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_12153.1_10417.t1 gi|260828245|ref|XP_002609074.1| hypothetical protein BRAFLDRAFT_91042 [Branchiostoma floridae] 5.0e-22

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
egg-Dshape 1
>Adult tissues
maleGonad 1

Transcript
Transcript IDpfu_aug1.0_12153.1_10417.t1
Definition-
>pfu_aug1.0_12153.1_10417.t1
atggcaatagtatgtgaaaggttcacaaccagtaaacttcagaagtttgaagatctgaactccatagcaacctatggttt
ccgtggcgaggcattggccagcattagtcatgtggcacatgttaccataacaaccagaactgctgattccaaatgtgcct
acagtcactatcaaaaatttcattttgaagaacgtatctatcctctacaaagaagaggagaaactcccttttgtaatttg
ctgttgtga

Protein
Protein IDpfu_aug1.0_12153.1_10417.t1
Definition-
>pfu_aug1.0_12153.1_10417.t1
MAIVCERFTTSKLQKFEDLNSIATYGFRGEALASISHVAHVTITTRTADSKCAYSHYQKFHFEERIYPLQRRGETPFCNL
LL

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