Gene
| Gene Model ID | pfu_aug1.0_1203.1_36881 |
|---|---|
| Locus | scaffold1203.1 : 49168 ... 63895 : - |
| To GenomeBrowser | scaffold1203.1:49168..63895 |
| Genes list of scaffold | scaffold1203.1 |
| Synonym | pfu_aug2.0_310.1_00589 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1203.1_36881.t1 | 1 | 1 | zf-C3HC4_3 | 16 | 65 | 2.4e-06 | 27.1 | 2.4e-09 | 2.4e-06 | 27.1 |
| pfu_aug1.0_1203.1_36881.t1 | 3 | 1 | zf-B_box | 18 | 42 | 1.8e-07 | 30.8 | 0.39 | 380.0 | 1.0 |
| pfu_aug1.0_1203.1_36881.t1 | 1 | 1 | zf-RING_2 | 18 | 63 | 6.4e-07 | 29.1 | 6.4e-10 | 6.4e-07 | 29.1 |
| pfu_aug1.0_1203.1_36881.t1 | 2 | 1 | zf-C3HC4_4 | 19 | 62 | 1.3e-08 | 34.5 | 1.3e-11 | 1.3e-08 | 34.5 |
| pfu_aug1.0_1203.1_36881.t1 | 1 | 1 | zf-C3HC4 | 19 | 62 | 6.5e-08 | 32.1 | 6.6e-11 | 6.5e-08 | 32.1 |
| pfu_aug1.0_1203.1_36881.t1 | 1 | 1 | zf-C3HC4_2 | 19 | 62 | 6.4e-07 | 29.2 | 6.5e-10 | 6.4e-07 | 29.2 |
| pfu_aug1.0_1203.1_36881.t1 | 1 | 1 | zf-RING_UBOX | 19 | 46 | 6.4e-06 | 25.7 | 2.9e-08 | 2.8e-05 | 23.7 |
| pfu_aug1.0_1203.1_36881.t1 | 3 | 2 | zf-B_box | 57 | 64 | 1.8e-07 | 30.8 | 0.4 | 390.0 | 1.0 |
| pfu_aug1.0_1203.1_36881.t1 | 3 | 3 | zf-B_box | 98 | 136 | 1.8e-07 | 30.8 | 1.9e-10 | 1.8e-07 | 30.8 |
| pfu_aug1.0_1203.1_36881.t1 | 2 | 2 | zf-C3HC4_4 | 114 | 126 | 1.3e-08 | 34.5 | 0.65 | 640.0 | 0.3 |
| pfu_aug1.0_1203.1_36881.t1 | 1 | 1 | ApbA_C | 169 | 260 | 1.1e-07 | 31.9 | 2.2e-10 | 2.2e-07 | 30.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1203.1_36881.t1 | gi|260795691|ref|XP_002592838.1| | hypothetical protein BRAFLDRAFT_201537 [Branchiostoma floridae] | 9.0e-17 |
Transcript
| Transcript ID | pfu_aug1.0_1203.1_36881.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1203.1_36881.t1 atgaattcatcccaaacgactgacgagtcagtttctttggaaagcgagcttacatgtcccatttgtttgggaatcttcaa cagtccagtttcactgccttgccttcatagtttttgctatgagtgcattagaaaagttcctacgcgtcaacttcaactta gagtggaagtcatttgtccgcaatgtagaagctcagcactccttcaaaatggcagatttgaagcactaccgaaaaatact actatagccaatatcattgaaatagaagaacggaggcgaacaaaatgcgagtcatccatttgtaaagtccatagaaagga gtatggcttagcttgcttcgactgctcagttgtgttgtgcacggagtgccttttcccagatcataaatctcacgacgtta gatccatatcacaagcacagaatagttatctggcagagcttaaaaccaaaacgattccacgactgaaacagctacaggca agcgtggataagaaacataaatggtggaataacgccgacaagaaaatgacggttatcaaacagcgaccaatgagcgaaat ttgggacgattccggcattagagacttaatatgggaccaatgcgatgatatatctaagatgtttcaaaatctacgagcag aactaaaggaaaaagaaaatgaggttattgcagattttcgcaccaagcacaacaagaagagatcgactatgcaaaggaat ctagataaggctaagtttgagttagaagaattgaacgggctgatcgcagaggccgggaaactgacagaatcggatccctt ggagtcgatccagggttgtataaagcttagaactcgattttcccagcatcctttaatcgacgttattgaagaaggaatag aaaataccccaaaggtttattcctgtagcaaaaaagtaggccaagctctggaggggatagaaactaaaatccggtccatt agtcttcaatcttgtatgatcagacctttgacccatactttgggaaaacgccagaaaatatctggagaagaaactgacct tacgctgagggcaggatactcttatactgaaagtatgccgagttcagtcccactctttcaccctacaccgaggacaggac actcttacttaccctccgccgaggacaggacactcttctactga |
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Protein
| Protein ID | pfu_aug1.0_1203.1_36881.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1203.1_36881.t1 MNSSQTTDESVSLESELTCPICLGIFNSPVSLPCLHSFCYECIRKVPTRQLQLRVEVICPQCRSSALLQNGRFEALPKNT TIANIIEIEERRRTKCESSICKVHRKEYGLACFDCSVVLCTECLFPDHKSHDVRSISQAQNSYLAELKTKTIPRLKQLQA SVDKKHKWWNNADKKMTVIKQRPMSEIWDDSGIRDLIWDQCDDISKMFQNLRAELKEKENEVIADFRTKHNKKRSTMQRN LDKAKFELEELNGLIAEAGKLTESDPLESIQGCIKLRTRFSQHPLIDVIEEGIENTPKVYSCSKKVGQALEGIETKIRSI SLQSCMIRPLTHTLGKRQKISGEETDLTLRAGYSYTESMPSSVPLFHPTPRTGHSYLPSAEDRTLFY |
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