Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_12.1_36234
Locus scaffold12.1 : 370586 ... 382000 : +
To GenomeBrowser scaffold12.1:370586..382000
Genes list of scaffold scaffold12.1
Synonym pfu_aug2.0_595.1_17623

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_12.1_36234.t1 2 1 ABC_membrane 147 333 5.4e-36 124.4 1.4e-39 1.1e-35 123.4
pfu_aug1.0_12.1_36234.t1 2 2 ABC_membrane 335 368 5.4e-36 124.4 0.018 130.0 1.7

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_12.1_36234.t1 gi|345489380|ref|XP_003426124.1| 0.0

Transcript
Transcript IDpfu_aug1.0_12.1_36234.t1
Definition-
>pfu_aug1.0_12.1_36234.t1
atgaacgacgtagggggtatatctgatgtctttaggtttgtgaccttccacctttattttcctgccattttagtacagtt
tgtcctttgctggttcagtgataaagtacaggagtttgaacaagtcacctctgaagattgcttccgatttatattcaagt
ttaccaagagaccaattcagttttacaaatttactttttgtcaggagtatttatattcgtcggtacgtaatttagtcaag
gaaggcactgacgaaaatgacgaaaattgaatacagcagagttcttcggaaactccagccacagatggaatagaaatccg
ctccatgaacaaagatggcactacgtacacggaggtcaacgtagtggacggcaagaaatgtcagccggccaagctactta
atgctttagtgtctgcctactcccccatgtgccttatgacagctttctacaaacttatctttgatgtctttcagttcctt
agtccacttattttaaagttattaatacagtttacctatgacaagtcagaattcctatggaggggatatttttatgccat
tttgatgttagtggttgccattcttcagtcattcattctacaccagtatttccacggctgcttcttgctgggaatgagga
tacgaacagctctcatatctgccatttatagaaagatgttgaatctgtctaacactgccaggaaaaatgccacagttggc
gagatagtaaatctaatgtctgtggacgcccagagatttatggatctaatgacatatatacacaccatatggtccggacc
actacagattattattgctttgtacttcctgtggcgagaacttggtgctagtgtatttgcaggatttgctgttatggtca
tattgattccgatcaatgccctcatcgcaaaaaagaccagagatttacaggtcaagcaaatgaatatgaaggacaaaagg
attaaactaatgaatgaggtgctcaatggaataaaggtatccttagtgacttttgctgtatatgtactgagtgacccaac
aaatattctggatgcagagaaagcttttgtatcattgtccctatttaatattttacgttttccgatgtccatgttgcctc
aagttatatccaacattgtacagactacagtatctctgaagagacttcaggctttcttgaacaatgaggaactggaccct
aattgtgtgcaaagggacatcaacagcaaacattcaatcacagtggacaaagcctcctttacatgggaaaaagatgcaga
gaaaactctcagcaagtaa

Protein
Protein IDpfu_aug1.0_12.1_36234.t1
Definition-
>pfu_aug1.0_12.1_36234.t1
MNDVGGISDVFRFVTFHLYFPAILVQFVLCWFSDKVQEFEQVTSEDCFRFIFKFTKRPIQFYKFTFCQEYLYSSVRNLVK
EGTDENDENXIQQSSSETPATDGIEIRSMNKDGTTYTEVNVVDGKKCQPAKLLNALVSAYSPMCLMTAFYKLIFDVFQFL
SPLILKLLIQFTYDKSEFLWRGYFYAILMLVVAILQSFILHQYFHGCFLLGMRIRTALISAIYRKMLNLSNTARKNATVG
EIVNLMSVDAQRFMDLMTYIHTIWSGPLQIIIALYFLWRELGASVFAGFAVMVILIPINALIAKKTRDLQVKQMNMKDKR
IKLMNEVLNGIKVSLVTFAVYVLSDPTNILDAEKAFVSLSLFNILRFPMSMLPQVISNIVQTTVSLKRLQAFLNNEELDP
NCVQRDINSKHSITVDKASFTWEKDAEKTLSK

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495