Gene
| Gene Model ID | pfu_aug1.0_12.1_36220 |
|---|---|
| Locus | scaffold12.1 : 150580 ... 181445 : - |
| To GenomeBrowser | scaffold12.1:150580..181445 |
| Genes list of scaffold | scaffold12.1 |
| Synonym | pfu_aug2.0_136.1_20312 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_12.1_36220.t1 | 1 | 1 | ZZ | 205 | 239 | 7.9e-09 | 34.9 | 1.2e-12 | 1.8e-08 | 33.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_12.1_36220.t1 | gi|260818246|ref|XP_002604294.1| | hypothetical protein BRAFLDRAFT_88583 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_12.1_36220.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12.1_36220.t1 atgctcctacagaggtcccagcatgccaaggctgtagccgatgtctatacttttgctgcaagttttctacgttcatatga agcaaatcagattttccagatcccagtgtctttattcctacaagaactcctgtcttatcaggagggcttctctaaacact atgctgacagtctggatgggtgtggtttggcccaggagggcagggtcagggagtcctactattccttcatcagacggctc actgaggctttacatagtacacacagacaggaactggacaagaaagtggttccagcgtatgaatacacccaggcctgttt acttcacttgttagatgtagactggcagccctatgacttgacctttatcacagaggtcaaccttcctacactctacctca acatagctaaagaaaccgtcaagatgagggaatgtacgtacggaacagaagaagaagagaatgaaatgaaggagtatgag aagtgtatgaagtggtttgaagattgttctaacggctttgagaagtggtatgacagtatgaagaaagaggacaaggacga gaagaaagccgtacagatgtttgtagccaggttctgtgaccttctggacgtagaggtcagctgtgacgggtgtgatgtca cgttaccaggacgacggtatcgttgtttacagtgtgaggacatggacttgtgtgctacatgttatgtaggtggagttaag ccagaaggggagcatactcatgaccatgacatggtgcatctagtgcacaatgcaaatcatgatattacaaagtttcccct tattaaatgggacataattcatcctgaacagccccaagggatggtggatcatgactatgtcaagctagcagaacacctgc aatcacagtgtatggagatagccacacactgtctgaaacaggtgcctgatgatgctgaagacagcagtaagatagcccag ggtgatcagttagacatgagagccatacagagtaaacaagaggaagcctttgccatacatacacaggagagaattatggg attactcggtgcaatgattccaagagaggaaaagattaccaacatgggaaataagtacaactttacaaccaaggaattta tacagcttcttttcaaaatagccaggggagagactggtcatgaagtgaacacccggcatcttgccatgggactacttggc ccactgttaacaaaatgtgatttagaggtatcagaccaggctgtagaaagtgattctctcaaggataatacagcagatct gattggctggtcatctgtcaagtatctattctcctttggtgctgactgcttggaaaaatgtggtttggagtgggcctgtt cagtgtcaaggatcctacaaagcctgtactgctcacctgactggaggactgttatactacatcaccttagaacatgtgta caaaacctttctagtgaaccagacctgccagccatctttgctttgtttgttatggcaggatttccagaggttctgacaat aggtagtatagtacagtttaaccataccagcatggacaggaagacaggagtggtattaaagcactacccagacagatacc agacgttaattgtggaaatcaaaactcgtaaacgatatacgatccaggacaagtatgtggattgtcactcctccattcca gaccttctagattccaatcatctctcagtatttgttagtaatgtgaagacaatagtactggaactcagagcagacaagga attgacaccagagacagtttgggttatgtccctttgccttaaggtcctcaataagaccctgaagtcatcagaccactgta tatcagaggagttatttgacccaggatttatacagtgtctggtctatatcgccagtaaaggcacagaattcagtcaacag tggctactaaaggacttagaggttttgtctttgatgttgttcaccaatgagggaagttcatctacatacaagaaaggtaa atctttaccgttctcagaacagctagcagaggctctggagaaacattccaaagccagcaaggaacagaacgaagcctccg agagtgcgactagtgacgaggatggcatggcctcagactcagactcttcatcactaacattctctgtctctgataacgaa acagaaggaaagtctgacgttaataaggtgtttggtgacctggacgagaaaaccaaagtcatgtttgagacattacacag tgacctgaagcttccattagatgttctacgcgtaatatatgatatgaataacaaaaatcccgatgatgtcgtcaaagcaa ttgtagaaaaatgtttggataaagcatcagaggaggagtgggtggagaatcagaagctgatccagacccccgacaatgac cttgaagatgacattcagaaaacacagagaagtaaaagtgctgagcttctcaaacaggagctggaaaaacaagggagaaa atcatcacgggaatatatctacaaagtcaacatggccatgtcagtcttgtatgcaagacaggtccttactagtctactgg ctaagtggcaggcacatggccctgtgatcaacacagagctactggggtgtaaagatatacaacagataccatgtgttctt gaccttctcaataaatcagaaagcaaaagtagattccagatggttgtagacagagttgtacatcactgtgagagggagag tctgatccccatagccagcacggccggacagtttatggaggaggtcacattgtcttccatcaccaaggagtcacctcacg attataaggaggatgctgcggtgaaggagaagatacagctcccaggagcctcctgtctcaggatctcatttgacaataag tgcagtttgaagggaagctgtgattctcttgtattctcctctacatgtgatttactccaaaacaaacatgaattctccat ggaaaactccagtaactgggctagcttccaaattccaggtgatactgtgtattatgagttttgttgtacaacatctaagg acggtaaatctggatggggttataagttcacggtgacagccggcacaagggacagcttcgagacaggatatgctatactc aataaagttctctcaacagatctggcttttgttatggaccttgaccttggtttgttgaagccgttatggattatgtacaa taacagtactaagtctgaggtaatgacagggacgttggtaactcctgttatacgagccctcacagaactcatcctccaag tcgagtctttagcaatggacagggggatagtcactcagtacctacttgccatacaagatattgacgaaatccgcaaagtt gttggacaggtaggggtaacaatgtctgaaaatgtcaactag |
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Protein
| Protein ID | pfu_aug1.0_12.1_36220.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12.1_36220.t1 MLLQRSQHAKAVADVYTFAASFLRSYEANQIFQIPVSLFLQELLSYQEGFSKHYADSLDGCGLAQEGRVRESYYSFIRRL TEALHSTHRQELDKKVVPAYEYTQACLLHLLDVDWQPYDLTFITEVNLPTLYLNIAKETVKMRECTYGTEEEENEMKEYE KCMKWFEDCSNGFEKWYDSMKKEDKDEKKAVQMFVARFCDLLDVEVSCDGCDVTLPGRRYRCLQCEDMDLCATCYVGGVK PEGEHTHDHDMVHLVHNANHDITKFPLIKWDIIHPEQPQGMVDHDYVKLAEHLQSQCMEIATHCLKQVPDDAEDSSKIAQ GDQLDMRAIQSKQEEAFAIHTQERIMGLLGAMIPREEKITNMGNKYNFTTKEFIQLLFKIARGETGHEVNTRHLAMGLLG PLLTKCDLEVSDQAVESDSLKDNTADLIGWSSVKYLFSFGADCLEKCGLEWACSVSRILQSLYCSPDWRTVILHHLRTCV QNLSSEPDLPAIFALFVMAGFPEVLTIGSIVQFNHTSMDRKTGVVLKHYPDRYQTLIVEIKTRKRYTIQDKYVDCHSSIP DLLDSNHLSVFVSNVKTIVLELRADKELTPETVWVMSLCLKVLNKTLKSSDHCISEELFDPGFIQCLVYIASKGTEFSQQ WLLKDLEVLSLMLFTNEGSSSTYKKGKSLPFSEQLAEALEKHSKASKEQNEASESATSDEDGMASDSDSSSLTFSVSDNE TEGKSDVNKVFGDLDEKTKVMFETLHSDLKLPLDVLRVIYDMNNKNPDDVVKAIVEKCLDKASEEEWVENQKLIQTPDND LEDDIQKTQRSKSAELLKQELEKQGRKSSREYIYKVNMAMSVLYARQVLTSLLAKWQAHGPVINTELLGCKDIQQIPCVL DLLNKSESKSRFQMVVDRVVHHCERESLIPIASTAGQFMEEVTLSSITKESPHDYKEDAAVKEKIQLPGASCLRISFDNK CSLKGSCDSLVFSSTCDLLQNKHEFSMENSSNWASFQIPGDTVYYEFCCTTSKDGKSGWGYKFTVTAGTRDSFETGYAIL NKVLSTDLAFVMDLDLGLLKPLWIMYNNSTKSEVMTGTLVTPVIRALTELILQVESLAMDRGIVTQYLLAIQDIDEIRKV VGQVGVTMSENVN |
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