Gene
| Gene Model ID | pfu_aug1.0_1152.1_15375 |
|---|---|
| Locus | scaffold1152.1 : 20616 ... 42113 : + |
| To GenomeBrowser | scaffold1152.1:20616..42113 |
| Genes list of scaffold | scaffold1152.1 |
| Synonym | pfu_aug2.0_233.1_10474 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1152.1_15375.t1 | 2 | 1 | MMS1_N | 10 | 45 | 4.3e-27 | 94.4 | 0.00058 | 2.9 | 5.9 |
| pfu_aug1.0_1152.1_15375.t1 | 2 | 2 | MMS1_N | 66 | 208 | 4.3e-27 | 94.4 | 2.1e-28 | 1.1e-24 | 86.5 |
| pfu_aug1.0_1152.1_15375.t1 | 1 | 1 | CPSF_A | 454 | 737 | 0.0 | 259.1 | 0.0 | 0.0 | 258.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1152.1_15375.t1 | gi|45383688|ref|NP_989547.1| | DNA damage-binding protein 1 [Gallus gallus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1152.1_15375.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1152.1_15375.t1 atgtccatccgtctgccgtcaagacgattagaagagctcacagtgatagacatgcagtttctacatggatgtaccacacc aacccttgtgttagtccaccaagatcagcacggcagacacgttaagacgtacgagatctccttacgtgataaagagttcc aaaaaggaccgtggaaacaagataatgtagaaacagaagccagcatggttatagcaggtatctggtcactgagagtaaat tcagaggaatacgacaacatcattgttctgtcttttgtgggacaatcaagagtattgatgttgaatggtgaggaggttga ggagacggagttagctgggtttgagtcagatcaacaaactttcctctgtgctaatgtcgtccacaatcagctcatacaga ttacgcccctgtctgtacgattaatcagctgtgagacacagagactagtgagtgaatggcggcatcccgggggtaagaac atcagtttggctagctgtaatacgtgtcaagttatcacagctgtgggaagtgaactttattacctggagttagctcctgg atgcattaatcaagttggtacatgtaccatggaacatgaagtggcgtgtgttgacttgacccccctgagggagggacagg aaagggcggatatgtgctgtcttggattatggaccgatatttctgcacgagtgctccggctacctacatttgaaagtttg catgtggaaatgctagggggagagatcattccccgctccattttgatgactacatttgaaggtatccagtatttattggt agctctaggagacggagccctgttctattttaatcttaatgttgatacaggatatttctgtgagaagaggaaagtgacat taggtacacagccgactgtgttaaagacatttagatcattatcaaccactaacgtgtttgcttgttctgatcgccccact gtgatatactccagcaatcataagctggtcttctctaacgttaatctgaaagaagtcaatcatatgtgtccacttaactc tgagggatatccagatagtttggccttagccaatgacagtacattaactatcggtacaattgatgaaatacagaagcttc acatacgaacaatcaatctgggagagtcaccgaggcggatagcgtaccaggaggcttcacagacgtttggtgttatctct atgaggatggatctacaggatagtaacagtagtaatccgacacgccccagtgcctccactcacgctgccatgacaacgtc aagctccagcggtaaaatggttaccacgggaacaagtaccatgggagagcatacatttggagatgaagttgatgttcatt ccctccttatcatagatcaacatacatttgaagttttacatgcccatacgttaatgccaaacgagtttgccaccagtctg atctcgtctaagcttggcgaggactctcacacatactatatagtgggtactgcccttgtacatccagaggaagcagaacc taagcagggacggatacttgtcttccagtttcaagatggaaagcttaaccaagtagcagagaaagacatcaaaggtgcag cttatacattgttggatttcaatggaaaactgctagccagtattaatagtacagtaagactgtttgaatggacagcagaa aaggagttacgactggaatgtagttacttcaacaacattgtggccttgtacatgaaatctaagggagactttatattggt tggagatctgatgaggtccattacattattactgtataaacccatggagggtacttttgaagagattgccagagacttta atccaaattggatgacagcagtggagatactagatgatgagaactttctaggagcggagaattcttttaatttattcacg tgtcagaaagacagtgcatcaacgacagatgaagacagacagaacttacaggaggtgggcatgttccaccttggagaatt cgtcaatgttttcagacatgggtctttggtgatgcagcatgctggtgagaacagtacacctacccaaggttctgttttgt atggtacagttaatggtgcagtgggtcttgttacacagataccacaggatttttataacttcttactggaggtacaaaat agactggctaaagtcatcaaaagtgtgggcaaagtagaacactcattgtatcctttatacatgtacattgtactttgtga ttcattttgtttgtttaacttgaggtcatcctcatcgggaactggtgaaggaacaattggtttgaaatggagaacattta gagaataa |
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Protein
| Protein ID | pfu_aug1.0_1152.1_15375.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1152.1_15375.t1 MSIRLPSRRLEELTVIDMQFLHGCTTPTLVLVHQDQHGRHVKTYEISLRDKEFQKGPWKQDNVETEASMVIAGIWSLRVN SEEYDNIIVLSFVGQSRVLMLNGEEVEETELAGFESDQQTFLCANVVHNQLIQITPLSVRLISCETQRLVSEWRHPGGKN ISLASCNTCQVITAVGSELYYLELAPGCINQVGTCTMEHEVACVDLTPLREGQERADMCCLGLWTDISARVLRLPTFESL HVEMLGGEIIPRSILMTTFEGIQYLLVALGDGALFYFNLNVDTGYFCEKRKVTLGTQPTVLKTFRSLSTTNVFACSDRPT VIYSSNHKLVFSNVNLKEVNHMCPLNSEGYPDSLALANDSTLTIGTIDEIQKLHIRTINLGESPRRIAYQEASQTFGVIS MRMDLQDSNSSNPTRPSASTHAAMTTSSSSGKMVTTGTSTMGEHTFGDEVDVHSLLIIDQHTFEVLHAHTLMPNEFATSL ISSKLGEDSHTYYIVGTALVHPEEAEPKQGRILVFQFQDGKLNQVAEKDIKGAAYTLLDFNGKLLASINSTVRLFEWTAE KELRLECSYFNNIVALYMKSKGDFILVGDLMRSITLLLYKPMEGTFEEIARDFNPNWMTAVEILDDENFLGAENSFNLFT CQKDSASTTDEDRQNLQEVGMFHLGEFVNVFRHGSLVMQHAGENSTPTQGSVLYGTVNGAVGLVTQIPQDFYNFLLEVQN RLAKVIKSVGKVEHSLYPLYMYIVLCDSFCLFNLRSSSSGTGEGTIGLKWRTFRE |
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