Gene
| Gene Model ID | pfu_aug1.0_11307.1_24869 |
|---|---|
| Locus | scaffold11307.1 : 1 ... 25190 : + |
| To GenomeBrowser | scaffold11307.1:1..25190 |
| Genes list of scaffold | scaffold11307.1 |
| Synonym | pfu_aug2.0_551.1_04330 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_11307.1_24869.t1 | 3 | 1 | TPR_12 | 9 | 78 | 5.1e-17 | 61.5 | 4.4e-06 | 0.0047 | 16.8 |
| pfu_aug1.0_11307.1_24869.t1 | 4 | 1 | TPR_7 | 52 | 73 | 2.4e-07 | 30.0 | 0.0014 | 1.5 | 8.7 |
| pfu_aug1.0_11307.1_24869.t1 | 5 | 1 | TPR_8 | 53 | 77 | 2.2e-07 | 30.1 | 0.0007 | 0.74 | 9.7 |
| pfu_aug1.0_11307.1_24869.t1 | 3 | 1 | TPR_14 | 53 | 81 | 1.4e-06 | 28.3 | 0.0075 | 7.9 | 7.4 |
| pfu_aug1.0_11307.1_24869.t1 | 5 | 2 | TPR_8 | 95 | 121 | 2.2e-07 | 30.1 | 0.095 | 100.0 | 3.0 |
| pfu_aug1.0_11307.1_24869.t1 | 3 | 2 | TPR_12 | 103 | 171 | 5.1e-17 | 61.5 | 1.4e-09 | 1.4e-06 | 28.0 |
| pfu_aug1.0_11307.1_24869.t1 | 3 | 2 | TPR_14 | 143 | 171 | 1.4e-06 | 28.3 | 0.00086 | 0.91 | 10.3 |
| pfu_aug1.0_11307.1_24869.t1 | 5 | 3 | TPR_8 | 144 | 171 | 2.2e-07 | 30.1 | 0.00015 | 0.16 | 11.8 |
| pfu_aug1.0_11307.1_24869.t1 | 4 | 2 | TPR_7 | 145 | 165 | 2.4e-07 | 30.0 | 0.00018 | 0.19 | 11.5 |
| pfu_aug1.0_11307.1_24869.t1 | 3 | 3 | TPR_12 | 182 | 231 | 5.1e-17 | 61.5 | 5.5e-07 | 0.00059 | 19.7 |
| pfu_aug1.0_11307.1_24869.t1 | 5 | 4 | TPR_8 | 182 | 210 | 2.2e-07 | 30.1 | 4.6e-05 | 0.049 | 13.4 |
| pfu_aug1.0_11307.1_24869.t1 | 4 | 3 | TPR_7 | 182 | 205 | 2.4e-07 | 30.0 | 7.4e-05 | 0.078 | 12.8 |
| pfu_aug1.0_11307.1_24869.t1 | 3 | 3 | TPR_14 | 185 | 208 | 1.4e-06 | 28.3 | 0.0019 | 2.1 | 9.2 |
| pfu_aug1.0_11307.1_24869.t1 | 5 | 5 | TPR_8 | 221 | 230 | 2.2e-07 | 30.1 | 0.27 | 280.0 | 1.6 |
| pfu_aug1.0_11307.1_24869.t1 | 4 | 4 | TPR_7 | 222 | 231 | 2.4e-07 | 30.0 | 0.2 | 210.0 | 2.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_11307.1_24869.t1 | gi|260812401|ref|XP_002600909.1| | hypothetical protein BRAFLDRAFT_121105 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_11307.1_24869.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11307.1_24869.t1 atgattactcagaggtttaccacaacagatatgagctagcacgctacttccagtcaacgggagacaaatggctgtcagat cacttctttaacacttgcctacagacaacagacctggtaacaggagatgagggcaagctgagagctcagggccacgataa tgttggtagtgctttagaggaaaatggtgactatatagcggcagctgaacattacgaggcgtattataagttagccgtag atcataaggagtggatccaggccgacggtctcacgtaccatacagaggcgtgcatcaatctctcccgtatttataccgtc attgccgacaaaatcgttgaggaggaggcagagaaatccctggaatatttgaaagacgcacacagatatgctaatgaaag tggcgatagaacattggaaggaaagacggcttacaaactaggtcaagcctacgacaaatcaggcgatggggaaacggcct tacagtatctgaaggcgtaccttgacatttgtaatgcatccaaggacagtgacggtatagggaaagcttgtgacgccatc gctaaggcttatgccagacaaggaaaacttgagtcgagtatcgactatcttaagaaatttgtggaagtgtcagagtctgg gggagaggaaaaggggctaagtcgagcctgtcataacctgggaaatatatataanggagcatgtcgttcttggaaaccga ccatcgctagagaggctgatccaatggaaagatga |
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Protein
| Protein ID | pfu_aug1.0_11307.1_24869.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11307.1_24869.t1 DYSEVYHNRYELARYFQSTGDKWLSDHFFNTCLQTTDLVTGDEGKLRAQGHDNVGSALEENGDYIAAAEHYEAYYKLAVD HKEWIQADGLTYHTEACINLSRIYTVIADKIVEEEAEKSLEYLKDAHRYANESGDRTLEGKTAYKLGQAYDKSGDGETAL QYLKAYLDICNASKDSDGIGKACDAIAKAYARQGKLESSIDYLKKFVEVSESGGEEKGLSRACHNLGNIYXGACRSWKPT IAREADPMER |
|