Gene
| Gene Model ID | pfu_aug1.0_11099.1_10261 |
|---|---|
| Locus | scaffold11099.1 : 8289 ... 32855 : - |
| To GenomeBrowser | scaffold11099.1:8289..32855 |
| Genes list of scaffold | scaffold11099.1 |
| Synonym | pfu_aug2.0_1216.1_21471 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_11099.1_10261.t1 | 3 | 1 | SH3_9 | 211 | 257 | 2.0e-31 | 107.3 | 1.7e-14 | 4.9e-11 | 42.0 |
| pfu_aug1.0_11099.1_10261.t1 | 3 | 1 | SH3_2 | 212 | 257 | 8.9e-35 | 117.9 | 8.7e-09 | 2.6e-05 | 23.6 |
| pfu_aug1.0_11099.1_10261.t1 | 3 | 1 | SH3_1 | 215 | 253 | 1.1e-18 | 66.3 | 7.0e-05 | 0.21 | 11.0 |
| pfu_aug1.0_11099.1_10261.t1 | 2 | 1 | fn3 | 314 | 390 | 2.9e-10 | 40.1 | 1.3e-07 | 0.00039 | 20.4 |
| pfu_aug1.0_11099.1_10261.t1 | 2 | 2 | fn3 | 406 | 468 | 2.9e-10 | 40.1 | 1.5e-06 | 0.0046 | 17.0 |
| pfu_aug1.0_11099.1_10261.t1 | 3 | 2 | SH3_2 | 736 | 797 | 8.9e-35 | 117.9 | 6.3e-18 | 1.9e-14 | 52.8 |
| pfu_aug1.0_11099.1_10261.t1 | 3 | 2 | SH3_1 | 737 | 791 | 1.1e-18 | 66.3 | 3.2e-09 | 9.4e-06 | 24.9 |
| pfu_aug1.0_11099.1_10261.t1 | 3 | 2 | SH3_9 | 738 | 794 | 2.0e-31 | 107.3 | 2.6e-09 | 7.7e-06 | 25.4 |
| pfu_aug1.0_11099.1_10261.t1 | 3 | 3 | SH3_2 | 858 | 916 | 8.9e-35 | 117.9 | 4.1e-13 | 1.2e-09 | 37.4 |
| pfu_aug1.0_11099.1_10261.t1 | 3 | 3 | SH3_1 | 859 | 912 | 1.1e-18 | 66.3 | 1.6e-09 | 4.7e-06 | 25.8 |
| pfu_aug1.0_11099.1_10261.t1 | 3 | 3 | SH3_9 | 860 | 916 | 2.0e-31 | 107.3 | 3.6e-13 | 1.1e-09 | 37.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_11099.1_10261.t1 | gi|149063196|gb|EDM13519.1| | RIM binding protein 2, isoform CRA_a [Rattus norvegicus] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_11099.1_10261.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11099.1_10261.t1 atgccaaattttgtattcctgctgcaggtacaagacactgccaagagagaatatgaggaagccctgcattctctccagag tcgagtaacggagctacaacacaactgtcagacccaggaggatcggcataaacaactcacgcaagaactgcacacactcc aggctgccgcatctaaaaataacttcaaacaatcaccgtccccatcacaacatccgtcatcaaacaagtcatcatcgtcg tctaatcatccgtcatcagtattatcatcgtcatcgtcatcaaaatctcagcatccagtccaagaacatttgcaccaatc aaatgcttctttacaagaggcacaagggttaaccaatggtaatgagcataaccaccaagttgaatctacaaagtcacatg acacagacaagggagaagactctggcatggagagtcaaaaagaacaaaaaaaattcaaagcagagaaaatttatgttgaa tttctggaatgttgtgagatcctaaaatacatctcttctataattaagatgaagtccaaagcattagaagacaaactttc cgtccctgggagaaaaggtcccatacaagtatatatcgccaagtattcctatgatcctttccaacattctcctaatgata atcctgatgctgaactccccctggacgctggtgactatgtccttgtttatggagaaatggatgaggatggattctttgat ggtgaacttattgatgggagaaaaggacttgttccgtccaattttatcgaaagagtggcagatgaagacctgtcagaatt ccatgctgctatggctggcacaaatcaccatgacgatgacagtgtcactggcaacagcgttggaaacgaccttgactttg acagcagtgaagaagttgatgaaaaacctgtatctaatacaaaacaaggaattccttgtccaagagagataactcttgat cgacaactcacaaacagtatagttataagctggaagcctcctgaacaaacgggtaaaattataccggtcaagtcatacca tgtggtagtggacggtgaggtcaaaatggtcatcagggggaatgaacggacaaaggctttaatagaaaacttagatacaa ctcagaatcaccgagtgagtgtgcgatgtgtgtcgagccagggtcagtctgtagacagacagtgtacattgctgattggt aaagacgcagttcctacacctagtgaactcaaagctagtgacatcacagctaactccgcccacatttcttggttgcctgg caacagtaattatcagcattccatcatcgttaacgatcaggacatctgcacttgtaaacctggagtcactagttatacac taacagggctggtcccgagtagtgtacataaggtcaaggtcgtaggtaaaagtttaacagcagatcgccatggagacaga ctgtcagcttttgtagagtttaagacattggcaggagagataactcgtgatagcagcagtgagcgagggaattcatttga cgtttcagatgatgatatggacggtggtcgcagagtttcgttgtcaaacaagcgaggacacggtgaaaggagagattctc ctagcagcaaacgttcacaggatttaaagcatgaaaaagaaagacaaacaggaacaacaaaagaaggcaatgtagaaaat ctgaacggtcatggggaagatgtttctattgtaaaatctagtggaagtttttccaagaagccagataaaagttctgttgt tagtgatttggtgcataaaaatgaagtgaatattaggacaggacctaatactgaaagtcctaagaggactccaaaacacg ggtcagttattagtgaaaaagatgtccattgtgaaattgatagtacttctacacataggaatagtccaaaggtgcctcaa tctgccagccctaaacatggtgcaaaaatagacggtcgagtgtcaaatagttcacatcgaggggtcaataaaatacataa cgaccccaatgccaacaagatttcaaacagtccttacacggtgcgtgataatgctcatatttcagatagttatctctctc acgacgcggagagcactcgcatacctcagttagatctgacagattatgaagtggacgatagttgtgacgttgactcgata agcggggaaataaatccacctatagaggataatcgtgtgcgtttatttgtggcattgttcgattatgacccagagagtat gtcgcccaatgttgaatctctagaggaggagttaccattcaaagaggggcagataatcaagatatatggtgacaaggatg ccgatgggttctacaggggggagtgtaatggtagagtgggtttcgtcccctgtaatatggtgtctgaggtccaggtggac gaccctgatctggcagaacaattactcaaagaaagccaggctgctttcaatctcaatactcatatttcagagggtgataa ctacatgaagccattagatgtcaacacggaggacatgaggagcagtccaaatcgtgttaccacggtaacggctagtacac agcgaaggaaaatggtggcattatacgattatgatccacaagagctctcaccaaatgttgatgcagagcttgagctgtcg tttaagagcggagataacattgtaatttacggtgatatggacgatgatgggttttacctcggagagctgaacggtcagag aggactggtgccttctaacttcctacaggacgcaccgttaagtgacgaagaaaacatagaaagtgccagcataatctcac cttcaaggtcaggggaaagtataaacaacttgacggggtcccggacctcagatctgggtgtcgacaaagtaagtgactga |
|
Protein
| Protein ID | pfu_aug1.0_11099.1_10261.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11099.1_10261.t1 MPNFVFLLQVQDTAKREYEEALHSLQSRVTELQHNCQTQEDRHKQLTQELHTLQAAASKNNFKQSPSPSQHPSSNKSSSS SNHPSSVLSSSSSSKSQHPVQEHLHQSNASLQEAQGLTNGNEHNHQVESTKSHDTDKGEDSGMESQKEQKKFKAEKIYVE FLECCEILKYISSIIKMKSKALEDKLSVPGRKGPIQVYIAKYSYDPFQHSPNDNPDAELPLDAGDYVLVYGEMDEDGFFD GELIDGRKGLVPSNFIERVADEDLSEFHAAMAGTNHHDDDSVTGNSVGNDLDFDSSEEVDEKPVSNTKQGIPCPREITLD RQLTNSIVISWKPPEQTGKIIPVKSYHVVVDGEVKMVIRGNERTKALIENLDTTQNHRVSVRCVSSQGQSVDRQCTLLIG KDAVPTPSELKASDITANSAHISWLPGNSNYQHSIIVNDQDICTCKPGVTSYTLTGLVPSSVHKVKVVGKSLTADRHGDR LSAFVEFKTLAGEITRDSSSERGNSFDVSDDDMDGGRRVSLSNKRGHGERRDSPSSKRSQDLKHEKERQTGTTKEGNVEN LNGHGEDVSIVKSSGSFSKKPDKSSVVSDLVHKNEVNIRTGPNTESPKRTPKHGSVISEKDVHCEIDSTSTHRNSPKVPQ SASPKHGAKIDGRVSNSSHRGVNKIHNDPNANKISNSPYTVRDNAHISDSYLSHDAESTRIPQLDLTDYEVDDSCDVDSI SGEINPPIEDNRVRLFVALFDYDPESMSPNVESLEEELPFKEGQIIKIYGDKDADGFYRGECNGRVGFVPCNMVSEVQVD DPDLAEQLLKESQAAFNLNTHISEGDNYMKPLDVNTEDMRSSPNRVTTVTASTQRRKMVALYDYDPQELSPNVDAELELS FKSGDNIVIYGDMDDDGFYLGELNGQRGLVPSNFLQDAPLSDEENIESASIISPSRSGESINNLTGSRTSDLGVDKVSD |
|