Gene
| Gene Model ID | pfu_aug1.0_108.1_50638 |
|---|---|
| Locus | scaffold108.1 : 94776 ... 102800 : + |
| To GenomeBrowser | scaffold108.1:94776..102800 |
| Genes list of scaffold | scaffold108.1 |
| Synonym | pfu_aug2.0_4.1_13353 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_108.1_50638.t1 | 1 | 1 | RmlD_sub_bind | 61 | 208 | 3.3e-09 | 36.0 | 1.9e-12 | 4.0e-09 | 35.7 |
| pfu_aug1.0_108.1_50638.t1 | 2 | 1 | Epimerase | 62 | 297 | 1.1e-19 | 70.8 | 7.3e-22 | 1.5e-18 | 67.0 |
| pfu_aug1.0_108.1_50638.t1 | 1 | 1 | 3Beta_HSD | 63 | 182 | 4.7e-08 | 32.0 | 3.9e-11 | 8.3e-08 | 31.2 |
| pfu_aug1.0_108.1_50638.t1 | 1 | 1 | NAD_binding_4 | 123 | 278 | 3.6e-08 | 32.6 | 3.3e-11 | 7.0e-08 | 31.6 |
| pfu_aug1.0_108.1_50638.t1 | 2 | 2 | Epimerase | 327 | 362 | 1.1e-19 | 70.8 | 0.063 | 130.0 | 1.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_108.1_50638.t1 | gi|291231078|ref|XP_002735491.1| | PREDICTED: L-threonine 3-dehydrogenase, mitochondrial-like, partial [Saccoglossus kowalevskii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_108.1_50638.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_108.1_50638.t1 atgttccgttcccgtgtaatgtccgttcctcttggtttactctgccgatgtaaggcgagggaagttcagcgtgcgtcaaa gatcctacgtcttgtcaccgccagtccagtccaaactgtgcgtcatttcaatggcgtcaacgaaccccatcaacagtatg aagtatcgcatgcacacccaagagtgcttataacaggtagtcttggacagttgggaaccggcctagctaaagtactgaga agtcggtatgggaggaacaatgtcattatgtccgacatactaaaggccccaagacagacccaagaaagtggtccatacct ttttgctgacatcttggacttcaagaagctacaggacttgatagtatcgtacaatatagactggatcattcattttagtg ccctactgagcgccgtgggggagaataacgtccctttggcaatgagggttaatatagaaggccttcataatgtcctagag ctagctaaacagtataaactcaagatctttgtaccaagtactataggggcctttggtccggactcaccacgtaatcccac cccagacctgtgtatacagagaccaagaaccatatacggagtctcaaaagtacacgctgagctaatgggagagtattact tttacaaattcgggttggacttcaggagtctacgatttcccggggtcatatctgctgacacacacccaggaggagggaca actgactacgccgtacagatatttcacgacgcactaaagacgggagagtttgattgttacctccgggaggacaccatgct cccgatgatgtacatagatgattgtctcagatctatcgtggaattcatggagacgccaagcgaacgcctcacaatgcgta cctataatgtgtccgctatgagttttacgccagcggaaattgcagacgcagtacgaaaatatgtgccaaatttagctgta acatacaaaccagacaaaaggcaaagtatagccgattcttggccaatgcgtttcgatgactccaacgcccgtcgggactg gggctggaaacatcatatggaaatagatgacttatgtcgggctatgtttgactatctaannnnnnnnnnnnnnnnnnnta tttatactattatcatgagtgcatttttgattcactaa |
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Protein
| Protein ID | pfu_aug1.0_108.1_50638.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_108.1_50638.t1 MFRSRVMSVPLGLLCRCKAREVQRASKILRLVTASPVQTVRHFNGVNEPHQQYEVSHAHPRVLITGSLGQLGTGLAKVLR SRYGRNNVIMSDILKAPRQTQESGPYLFADILDFKKLQDLIVSYNIDWIIHFSALLSAVGENNVPLAMRVNIEGLHNVLE LAKQYKLKIFVPSTIGAFGPDSPRNPTPDLCIQRPRTIYGVSKVHAELMGEYYFYKFGLDFRSLRFPGVISADTHPGGGT TDYAVQIFHDALKTGEFDCYLREDTMLPMMYIDDCLRSIVEFMETPSERLTMRTYNVSAMSFTPAEIADAVRKYVPNLAV TYKPDKRQSIADSWPMRFDDSNARRDWGWKHHMEIDDLCRAMFDYLXXXXXXXIYTIIMSAFLIH |
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