Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_10661.1_46250
Locus scaffold10661.1 : 1 ... 10745 : -
To GenomeBrowser scaffold10661.1:1..10745
Genes list of scaffold scaffold10661.1
Synonym pfu_aug2.0_401.1_04115

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_10661.1_46250.t1 8 1 Ank_5 35 80 1.0e-34 117.7 1.6e-11 4.8e-08 32.9
pfu_aug1.0_10661.1_46250.t1 7 1 Ank 40 71 3.4e-40 133.8 6.9e-11 2.0e-07 30.4
pfu_aug1.0_10661.1_46250.t1 6 1 Ank_3 40 69 2.4e-26 89.1 1.2e-08 3.6e-05 23.5
pfu_aug1.0_10661.1_46250.t1 4 1 Ank_2 41 102 0.0 174.0 4.2e-14 1.3e-10 41.5
pfu_aug1.0_10661.1_46250.t1 5 1 Ank_4 41 94 5.3e-34 115.9 6.0e-08 0.00018 21.9
pfu_aug1.0_10661.1_46250.t1 8 2 Ank_5 60 97 1.0e-34 117.7 6.4e-07 0.0019 18.3
pfu_aug1.0_10661.1_46250.t1 7 2 Ank 73 102 3.4e-40 133.8 0.02 60.0 3.7
pfu_aug1.0_10661.1_46250.t1 6 2 Ank_3 73 98 2.4e-26 89.1 0.0042 12.0 6.4
pfu_aug1.0_10661.1_46250.t1 5 2 Ank_4 81 125 5.3e-34 115.9 0.099 290.0 2.1
pfu_aug1.0_10661.1_46250.t1 8 3 Ank_5 98 127 1.0e-34 117.7 0.69 2100.0 -0.8
pfu_aug1.0_10661.1_46250.t1 8 4 Ank_5 129 175 1.0e-34 117.7 3.1e-11 9.1e-08 32.1
pfu_aug1.0_10661.1_46250.t1 4 2 Ank_2 134 192 0.0 174.0 6.5e-17 1.9e-13 50.5
pfu_aug1.0_10661.1_46250.t1 7 3 Ank 139 168 3.4e-40 133.8 1.5e-09 4.5e-06 26.2
pfu_aug1.0_10661.1_46250.t1 5 3 Ank_4 139 188 5.3e-34 115.9 1.6e-14 4.6e-11 42.9
pfu_aug1.0_10661.1_46250.t1 6 3 Ank_3 139 166 2.4e-26 89.1 8.9e-06 0.026 14.7
pfu_aug1.0_10661.1_46250.t1 4 3 Ank_2 142 229 0.0 174.0 2.8e-18 8.2e-15 54.9
pfu_aug1.0_10661.1_46250.t1 8 5 Ank_5 162 214 1.0e-34 117.7 1.7e-11 4.9e-08 32.9
pfu_aug1.0_10661.1_46250.t1 7 4 Ank 170 195 3.4e-40 133.8 1.1e-09 3.3e-06 26.6
pfu_aug1.0_10661.1_46250.t1 6 4 Ank_3 170 193 2.4e-26 89.1 2.7e-06 0.0079 16.3
pfu_aug1.0_10661.1_46250.t1 5 4 Ank_4 195 219 5.3e-34 115.9 5.2e-05 0.15 12.5
pfu_aug1.0_10661.1_46250.t1 8 6 Ank_5 196 244 1.0e-34 117.7 0.0001 0.31 11.3
pfu_aug1.0_10661.1_46250.t1 7 5 Ank 207 226 3.4e-40 133.8 0.006 18.0 5.3
pfu_aug1.0_10661.1_46250.t1 6 5 Ank_3 207 224 2.4e-26 89.1 0.56 1700.0 -0.2
pfu_aug1.0_10661.1_46250.t1 4 4 Ank_2 212 296 0.0 174.0 1.9e-16 5.6e-13 49.0
pfu_aug1.0_10661.1_46250.t1 8 7 Ank_5 236 280 1.0e-34 117.7 1.2e-08 3.5e-05 23.8
pfu_aug1.0_10661.1_46250.t1 7 6 Ank 240 266 3.4e-40 133.8 1.3e-11 4.0e-08 32.6
pfu_aug1.0_10661.1_46250.t1 6 6 Ank_3 241 265 2.4e-26 89.1 3.8e-08 0.00011 22.0
pfu_aug1.0_10661.1_46250.t1 5 5 Ank_4 242 293 5.3e-34 115.9 2.8e-11 8.3e-08 32.5
pfu_aug1.0_10661.1_46250.t1 8 8 Ank_5 260 293 1.0e-34 117.7 0.0026 7.7 6.9
pfu_aug1.0_10661.1_46250.t1 7 7 Ank 276 293 3.4e-40 133.8 0.34 1000.0 -0.2

Transcript
Transcript IDpfu_aug1.0_10661.1_46250.t1
Definition-
>pfu_aug1.0_10661.1_46250.t1
atggcaacggaggacggcaacggtaaatcatatagtacaggccgtataacagaaccattatgtcctagaacaggaggacg
acatcggcagactaatggccttgaacaagaatatgaaaacggattgactcctttgatgcacgctgttaaaaaccgacaaa
tgggggccatgaagaaactgatcaagttaggggccaacataaacgcccaagacagccatggaaggacatcattggctact
gccgtctatcagggatggtacgagggagtggtctatttgctgaggaagagtgccaaacagaacattgcagagaaatcagg
tcgacttcccatacatgcttctacatacgacaaggatatcagatatattgagatgatgcatagcatacatagtcttgata
actgttataaaaaaatgacagcattacactgggcggcctttcataaccgtcctgaacacttccaactactaatgatgagt
ggagtggaccttaatgcacaggacattgatgggaaaactcctttacactgggctgctcagaatggtagtgttgagtgttg
taccatcattatacagtgttgtaagggaccagagctgataaatcgtctggattactcgggtaaaagtgccgtccactacg
cgtctgctgctgggcatagcctcttattgaggcaacttgctgacgtagacggctgtcacttagagctcgaggacccggat
gatagaactcccctgcactgggctgcggctatgggccagacagaatgtgtcaagatactgttagatcatggtgtatcagc
gagtcctatggatctggaaggaggatcaccattagagtacgcacagcaatcaggacatagcggatgtaccaaattactag
aggataaactaggaataaagcacagtccatcggtcaaaactaagcacaagaaaggcaagaaatccgcagcctcggattct
ggcagaaaatcggcagcgtctacgacaagcagccataaatccgggtcatcggataccggaactggaacgaac

Protein
Protein IDpfu_aug1.0_10661.1_46250.t1
Definition-
>pfu_aug1.0_10661.1_46250.t1
MATEDGNGKSYSTGRITEPLCPRTGGRHRQTNGLEQEYENGLTPLMHAVKNRQMGAMKKLIKLGANINAQDSHGRTSLAT
AVYQGWYEGVVYLLRKSAKQNIAEKSGRLPIHASTYDKDIRYIEMMHSIHSLDNCYKKMTALHWAAFHNRPEHFQLLMMS
GVDLNAQDIDGKTPLHWAAQNGSVECCTIIIQCCKGPELINRLDYSGKSAVHYASAAGHSLLLRQLADVDGCHLELEDPD
DRTPLHWAAAMGQTECVKILLDHGVSASPMDLEGGSPLEYAQQSGHSGCTKLLEDKLGIKHSPSVKTKHKKGKKSAASDS
GRKSAASTTSSHKSGSSDTGTGTN

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495