Gene
| Gene Model ID | pfu_aug1.0_10407.1_17623 |
|---|---|
| Locus | scaffold10407.1 : 32594 ... 48662 : - |
| To GenomeBrowser | scaffold10407.1:32594..48662 |
| Genes list of scaffold | scaffold10407.1 |
| Synonym | pfu_aug2.0_99.1_30194 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_10407.1_17623.t1 | 1 | 1 | Neur_chan_LBD | 19 | 213 | 6.8e-39 | 133.2 | 1.3004e-42 | 9.8e-39 | 132.7 |
| pfu_aug1.0_10407.1_17623.t1 | 2 | 1 | Neur_chan_memb | 221 | 308 | 9.1e-14 | 51.9 | 1.6e-17 | 1.2e-13 | 51.5 |
| pfu_aug1.0_10407.1_17623.t1 | 2 | 2 | Neur_chan_memb | 372 | 388 | 9.1e-14 | 51.9 | 0.76 | 5600.0 | -3.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_10407.1_17623.t1 | gi|291410398|ref|XP_002721504.1| | PREDICTED: acetylcholine receptor subunit delta [Oryctolagus cuniculus] | 9.99967e-42 |
Transcript
| Transcript ID | pfu_aug1.0_10407.1_17623.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10407.1_17623.t1 gtgaccctttctcagaccaatagcgattacgagggtattatgacggagattttcacaaccaacggctataacaagaaaat tttaccgaaagcaactcctaacaatccagttgagattgacctaagctttgtgcttcttggcatcaatgaaatagatgaat tagcagagaaaatgaccacgactgcatatattgtgatatcctggaccgaccctggattagaatgggatcctgctgctcat ggtgacaccgacaacatatatgtcccacaggacgatatttggaaaccggatattttcttgcagaatggattcactaaatt taaagaacttggtggatctttctattatattccggttgaattcgaaggaagaccaacatggatgccctttgaagtgtttg agagtaggtgttcccttgatacgagttattatccctttgatgaacaaaggtgctccatcgcttttgtcgtatggagtcac tccgtggaagaggttgaaataacgaaaagtacctatggaataaggtatagtccagaattcaaagcaaacagcgtatggga catcctatcagtatctagtgctatcagcagagaaactagagcgtcgaaattaacattcacgtttcttctgaagcgtaagt ctctctactatgtggttaacatcatacttcccgtggtatttttgggcctcctgaatgggctcgtgtttatcattccagcg gattcaggcgaaaagacaggatactcagtcacagttttcctgtcccttgttgtatttttgacaatcataagtacaattct accggttaactcagagacggtttccttgttcggtatctttctgttcctccaagtcattattggagtgatggtacttatcg ttacgaccatgcaattacgcctaaatgcaagatctaccttgcatcaagttgatggcattttcctgaaagtagcaaaacta ggaaagaatacctgctgttgtcagcgaaggaagaatagaaggattagtccaagcaataaaatacatatcgttgagttcga gaagaggatatccgcgtggaagattggagataggaacaaactccaacaggacttggatctaaatccccgcactatatttc tattggtgtgtctgctggtgctgctggtggaccaagagtccccgagggcacatgtagccaatttcgatcaacttcggttg atcgtctttctcttcaacgcattcgaaaatttctattataaaaattcttcaaatttctaa |
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Protein
| Protein ID | pfu_aug1.0_10407.1_17623.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10407.1_17623.t1 VTLSQTNSDYEGIMTEIFTTNGYNKKILPKATPNNPVEIDLSFVLLGINEIDELAEKMTTTAYIVISWTDPGLEWDPAAH GDTDNIYVPQDDIWKPDIFLQNGFTKFKELGGSFYYIPVEFEGRPTWMPFEVFESRCSLDTSYYPFDEQRCSIAFVVWSH SVEEVEITKSTYGIRYSPEFKANSVWDILSVSSAISRETRASKLTFTFLLKRKSLYYVVNIILPVVFLGLLNGLVFIIPA DSGEKTGYSVTVFLSLVVFLTIISTILPVNSETVSLFGIFLFLQVIIGVMVLIVTTMQLRLNARSTLHQVDGIFLKVAKL GKNTCCCQRRKNRRISPSNKIHIVEFEKRISAWKIGDRNKLQQDLDLNPRTIFLLVCLLVLLVDQESPRAHVANFDQLRL IVFLFNAFENFYYKNSSNF |
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