Gene
| Gene Model ID | pfu_aug1.0_10295.1_24713 |
|---|---|
| Locus | scaffold10295.1 : 17336 ... 27071 : + |
| To GenomeBrowser | scaffold10295.1:17336..27071 |
| Genes list of scaffold | scaffold10295.1 |
| Synonym | pfu_aug2.0_887.1_24495 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_10295.1_24713.t1 | 2 | 1 | Prenyltrans_1 | 59 | 74 | 3.1e-06 | 27.1 | 0.003 | 11.0 | 6.0 |
| pfu_aug1.0_10295.1_24713.t1 | 2 | 1 | Cobalamin_bind | 83 | 126 | 2.3e-20 | 72.5 | 0.044 | 160.0 | 0.6 |
| pfu_aug1.0_10295.1_24713.t1 | 2 | 2 | Cobalamin_bind | 130 | 324 | 2.3e-20 | 72.5 | 2.3e-23 | 8.6e-20 | 70.6 |
| pfu_aug1.0_10295.1_24713.t1 | 2 | 2 | Prenyltrans_1 | 217 | 262 | 3.1e-06 | 27.1 | 1.3e-06 | 0.0046 | 16.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_10295.1_24713.t1 | gi|260820804|ref|XP_002605724.1| | hypothetical protein BRAFLDRAFT_121860 [Branchiostoma floridae] | 5.0e-18 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 2 |
| 8-16cell | 2 |
| egg-Dshape | 2 |
| trochophore | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_10295.1_24713.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10295.1_24713.t1 atggcagatactaaaaaatcccaaagtaccaagcgcctagagttgtgcgccatcataactgtattgttggttggcatagc tttagccatcactgtcattgtctaccttgttgagaataaaccaaaagattctgatttcattaaaccagatgcaagtgtac aaaaaacaccatatggagcagtaaacagtggagtagaatggttgaggagacagcagcatgactacatgtggccacaagga cagagtgctgatgctgtgttagccctggggcttggcaaaatggacgaattcaacaaagacagctgtgaattcagactggc cataaaaagtgctgaatttgatattctatcagcaatgcttgcaaatggtaacctcaatgacgcaacatggggtagaggtg ttcttgccaaatacatagtagctctgcgcacggcatgtgttgatgttgcaatgttccataataacaacaacctgcttact atgctggaaacccaatacaacacctacaagaattactatgacggtgatagacgtgccttgtcttggtacgcgctggctag gtgtaccgctggagaggcagtggggagtgatattataaccagacttactgctaccccagggacttatagcatgggagtag aggaggcagccatggtggccattgcattgtcttgtatggattatatgaacatgacaatgtacggaacagaaataatggcc gcccatgactacatcatagcacaacaacgctctgacggaacatttggtaacgagtttgagactgccctagcacttcaggc tttgaaaaactcaaacgtcacaaacctgagaatgattcaagacaaagccttggaatatctttccacccttattcaagata cctataatgggcagtacaagaatctagcagcggcaagtcacattatgacagctctagcaggaaaatctttcgcagatgcc aaaatggattgccctgatatgagtaagtttacaaaattaagttgtctcaaagtttcaatatga |
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Protein
| Protein ID | pfu_aug1.0_10295.1_24713.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10295.1_24713.t1 MADTKKSQSTKRLELCAIITVLLVGIALAITVIVYLVENKPKDSDFIKPDASVQKTPYGAVNSGVEWLRRQQHDYMWPQG QSADAVLALGLGKMDEFNKDSCEFRLAIKSAEFDILSAMLANGNLNDATWGRGVLAKYIVALRTACVDVAMFHNNNNLLT MLETQYNTYKNYYDGDRRALSWYALARCTAGEAVGSDIITRLTATPGTYSMGVEEAAMVAIALSCMDYMNMTMYGTEIMA AHDYIIAQQRSDGTFGNEFETALALQALKNSNVTNLRMIQDKALEYLSTLIQDTYNGQYKNLAAASHIMTALAGKSFADA KMDCPDMSKFTKLSCLKVSI |
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