aug_v2a.22479: Genome browser

Gene

Gene Model ID	aug_v2a.22479
Locus	scaf15474 : 10434 ... 12455 : -
To GenomeBrowser	scaf15474:10434..12455
Genes list of scaffold	scaf15474

Manual annotation

Study field	Immunity
Gene name	Adi-TRAF-6-1

Study field	Apoptosis
Gene name	Adaptor TRAF family16

Annotation by Blast2GO

Annotation	GO
tnf receptor-associated factor 6-like	GO:0009987

Blast Hit to nr / sp

query	Subject ID	Subject Name	evalue
aug_v2a.22479.t1	gi\|118344312\|ref\|NP_001071979.1\|	zinc finger protein [Ciona intestinalis]	8.99634e-43
aug_v2a.22479.t1	gi\|449667311\|ref\|XP_004206538.1\|	PREDICTED: TNF receptor-associated factor 6-like [Hydra vulgaris]	3.99931e-42

Transcript

Transcript ID	aug_v2a.22479.t1
Definition	-
>aug_v2a.22479.t1 gtacataaagtttttttcctttttgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttttcacgttgggtatttg attccttcaaaagggacctcgttctgcagtgaatgaacatgttaaggaggagatggtaagtcatttgacggatttcacca aggaattcgaagcattgaggattgagcagcaaggcctccaagcatcgcagagtcgctcccgacgcaccaggggtggggta gaaggccaggagcagggtagtcaagacgtcatgaatttggtgacattgtgtcgacgacagcaaacggaaatcgatggact gagacgcattgttaatgagctgacattcaagatagagcgtttagaacgccgccatgatgaatggctcatgagggtggaaa cgcagttgcaagaacttagtgtcaggtcagtgagatgctacgcgattgcgcagtgactccttggaaatacacttcgcacc gcgtaatgtatttatcttcgttgtcaaggagaaattcgccattccttctcgactcccgagatgtcagagtttttcgtcgc caatttagtcgtaatctatttcaattgtccacggatttgtggattggccaaggaggcagtcgaaggattattcgtcttca tgagtgaggggctcagatcttgggcgtactttcctccacagttacctagcactgctctggccagggattctatcccgcaa ctgcctgcacggttattcagcacgataccaactgatctacgacaggcagtgaattcgtgactgcagtgatctcagaaacc tcggttcaaactgtttgagaagatttgactcatctgctttgctggaaagatgtttgaattgtatgaattcaatagcattc agagcttctattgtgtggaatctcctcaccccggatctcgcaaagacaagaactatacaagaatggcctcaaaatccgac aaattacataacttaggctttcaggtggaatctcagcaaacaacgcctcacaataatgataacgattttctatattttct taaatttttattccttagattttagtttaaatgcacgaccccgtaagcggcaacgctttaatcactatcgtgttgaaata aaagttgttgtattgtacgtgaccagcaacaaagggttcttatttcaaagcaacaaagggttcttatagcgctctccact ggatataaatcactatccagcagctaagtgctgtcgaaatcaattgggttatccattggctaatgatttatttattggat agtgccatccatcctttgtggctgaaggataaaatattctttcttttgttaggttcaaccgtcaagaaacgagagcgttt gagttcgaaggccgtgtgtgcaatggctcttacatctggaggattgaaaactaccgacagcgtcgccaggatgctatcag cggcattgcgacggccgtactcagcccagccttctataccagcctctatggttacaagctgtgcttgcgtatcaacttga atggcgtggacagtggagttggaagatctattgctctgtttgttcacatgatgaagggggattatgatagcatccttgag tggccgtttaccgggaggatcacccttgccatcttggaccaatcagaatttcgtcagcacatcagcacgtcctttgttgg caagcccgatctgttgccctttcggcggctttcaacagaatttcgcaacagggagggctatggctgcgtggattttgctc tgatcgagctcatccgtgatcctcagtacattgaaaacgataccatgctcgttggcattcagattgatcactgaagcact cgcactcgttgttgtttaacccgtcagtgtccgtaagcgcactcatgacacttatagattttactttctctaacgccaga cgattttactcgtcaatggggaatcccccggacactgaggggttaaagctctcaattgtagtgaaggaaataatgatcaa gggataaatttgcaagtaacta

Transcript ID

aug_v2a.22479.t1

Definition

>aug_v2a.22479.t1
gtacataaagtttttttcctttttgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttttcacgttgggtatttg
attccttcaaaagggacctcgttctgcagtgaatgaacatgttaaggaggagatggtaagtcatttgacggatttcacca
aggaattcgaagcattgaggattgagcagcaaggcctccaagcatcgcagagtcgctcccgacgcaccaggggtggggta
gaaggccaggagcagggtagtcaagacgtcatgaatttggtgacattgtgtcgacgacagcaaacggaaatcgatggact
gagacgcattgttaatgagctgacattcaagatagagcgtttagaacgccgccatgatgaatggctcatgagggtggaaa
cgcagttgcaagaacttagtgtcaggtcagtgagatgctacgcgattgcgcagtgactccttggaaatacacttcgcacc
gcgtaatgtatttatcttcgttgtcaaggagaaattcgccattccttctcgactcccgagatgtcagagtttttcgtcgc
caatttagtcgtaatctatttcaattgtccacggatttgtggattggccaaggaggcagtcgaaggattattcgtcttca
tgagtgaggggctcagatcttgggcgtactttcctccacagttacctagcactgctctggccagggattctatcccgcaa
ctgcctgcacggttattcagcacgataccaactgatctacgacaggcagtgaattcgtgactgcagtgatctcagaaacc
tcggttcaaactgtttgagaagatttgactcatctgctttgctggaaagatgtttgaattgtatgaattcaatagcattc
agagcttctattgtgtggaatctcctcaccccggatctcgcaaagacaagaactatacaagaatggcctcaaaatccgac
aaattacataacttaggctttcaggtggaatctcagcaaacaacgcctcacaataatgataacgattttctatattttct
taaatttttattccttagattttagtttaaatgcacgaccccgtaagcggcaacgctttaatcactatcgtgttgaaata
aaagttgttgtattgtacgtgaccagcaacaaagggttcttatttcaaagcaacaaagggttcttatagcgctctccact
ggatataaatcactatccagcagctaagtgctgtcgaaatcaattgggttatccattggctaatgatttatttattggat
agtgccatccatcctttgtggctgaaggataaaatattctttcttttgttaggttcaaccgtcaagaaacgagagcgttt
gagttcgaaggccgtgtgtgcaatggctcttacatctggaggattgaaaactaccgacagcgtcgccaggatgctatcag
cggcattgcgacggccgtactcagcccagccttctataccagcctctatggttacaagctgtgcttgcgtatcaacttga
atggcgtggacagtggagttggaagatctattgctctgtttgttcacatgatgaagggggattatgatagcatccttgag
tggccgtttaccgggaggatcacccttgccatcttggaccaatcagaatttcgtcagcacatcagcacgtcctttgttgg
caagcccgatctgttgccctttcggcggctttcaacagaatttcgcaacagggagggctatggctgcgtggattttgctc
tgatcgagctcatccgtgatcctcagtacattgaaaacgataccatgctcgttggcattcagattgatcactgaagcact
cgcactcgttgttgtttaacccgtcagtgtccgtaagcgcactcatgacacttatagattttactttctctaacgccaga
cgattttactcgtcaatggggaatcccccggacactgaggggttaaagctctcaattgtagtgaaggaaataatgatcaa
gggataaatttgcaagtaacta

Protein

Protein ID	aug_v2a.22479.t1
Definition	-
>aug_v2a.22479.t1 MVSHLTDFTKEFEALRIEQQGLQASQSRSRRTRGGVEGQEQGSQDVMNLVTLCRRQQTEIDGLRRIVNELTFKIERLERR HDEWLMRVETQLQELSVRFNRQETRAFEFEGRVCNGSYIWRIENYRQRRQDAISGIATAVLSPAFYTSLYGYKLCLRINL NGVDSGVGRSIALFVHMMKGDYDSILEWPFTGRITLAILDQSEFRQHISTSFVGKPDLLPFRRLSTEFRNREGYGCVDFA LIELIRDPQYIENDTMLVGIQIDH*

Protein ID

aug_v2a.22479.t1

Definition

>aug_v2a.22479.t1
MVSHLTDFTKEFEALRIEQQGLQASQSRSRRTRGGVEGQEQGSQDVMNLVTLCRRQQTEIDGLRRIVNELTFKIERLERR
HDEWLMRVETQLQELSVRFNRQETRAFEFEGRVCNGSYIWRIENYRQRRQDAISGIATAVLSPAFYTSLYGYKLCLRINL
NGVDSGVGRSIALFVHMMKGDYDSILEWPFTGRITLAILDQSEFRQHISTSFVGKPDLLPFRRLSTEFRNREGYGCVDFA
LIELIRDPQYIENDTMLVGIQIDH*

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OIST Marine Genomics Unit since 2008