Gene
| Gene Model ID | aug_v2a.21671 |
|---|---|
| Locus | scaf14286 : 20747 ... 29065 : - |
| To GenomeBrowser | scaf14286:20747..29065 |
| Genes list of scaffold | scaf14286 |
Manual annotation
| Study field | Photoreceptors / Circadian |
|---|---|
| Gene name | Adi-bmal/cycle |
| Study field | Transcription Factor |
|---|---|
| Gene name | Adi-bmal/cycle |
| Description | Named thus based on BLASTP results against NCBI nr and molecular phylogenetic analyses (NJ and ML). This gene model has PAS domain but lacks bHLH domain. An older gene model, a00165801, was therefore used for analyses. |
| mRNA evidence |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| aryl hydrocarbon receptor nuclear translocator-like protein 1 | GO:0000976 GO:0005667 GO:0007623 GO:0009648 GO:0045892 GO:0045893 GO:0046982 GO:1901342 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| aug_v2a.21671.t1 | gi|156359347|ref|XP_001624731.1| | predicted protein [Nematostella vectensis] | 0.0 |
| aug_v2a.21671.t1 | gi|597744391|ref|XP_007234249.1| | PREDICTED: aryl hydrocarbon receptor nuclear translocator-like protein 1-like [Astyanax mexicanus] | 0.0 |
| aug_v2a.21671.t1 | gi|723546459|ref|XP_010296600.1| | PREDICTED: aryl hydrocarbon receptor nuclear translocator-like protein 1 [Balearica regulorum gibbericeps] | 0.0 |
| aug_v2a.21671.t1 | gi|597782369|ref|XP_007254729.1| | PREDICTED: aryl hydrocarbon receptor nuclear translocator-like protein 1 [Astyanax mexicanus] | 0.0 |
| aug_v2a.21671.t1 | gi|657748200|ref|XP_008309421.1| | PREDICTED: aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1 [Cynoglossus semilaevis] | 0.0 |
Transcript
| Transcript ID | aug_v2a.21671.t1 |
|---|---|
| Definition | - |
>aug_v2a.21671.t1 tagatcatatgagcgaaaattttcgaaatgtcttgattttgaagcctttcttaacagtcagatgccatggatggtgcttt gggtaaaaagagacgaagaattgaaagtgcgattgagtaagttcgcgatcattttcctgttctccgagattaggttatcg aatgggtttctcgaattttcgttggtcaggcaataatattcgtgtaaagattcgacaacactgtgttcatatgtaatcga atttgtatgtagaatattttgtgatgctgtacgtaagggggatcttattgtttacatgtgaaattacggcagacaacccg tctggaagaaatacctaattgaatgcatatctatgaatatacgtctacgatttcagcaaggaagtacttttcgcattcta tcgaaatggtgagcggacacaccaaagaactcatttgatgtcctttgacccgcattaacatctttgttggaaaagatcaa acagtttgctaaaacttttgcgaccgtattattgctccgtcttgtcactcagattaatacatcttagaatgctccacaca tgaattttgctacgtgaatttgggttttccagttgtctgagatttttctctaactacagaagagcaattattaagctgat aaattattccattttggcgaattgaccgatcgctatttcacgtgttcaagtggaaacaaatcatgtcattttcacgtgaa atagccggcatactaaagataatgcgaaatgttctactctaaaagtcgaacatcaccttgttctttccgaatgacctaac gctaggaaacttcacttcttttggttttatcatgtttccagcttttggcgatagttttattgtattcctttacctttaaa gctttttttttaaaataatcctgaagagtaatatcgttatgaaattatcattcacgtgaagggtggacatgatgtgacat cacaacgcagacattcttgctaggtagctcgcgggcaagctgctcatttcatgaattgtgaatgaattatttaaggaatg tttgtgcagccggatctaaagactatgtttacattctgtgatgtttggtgcagtggagcactgataagaccaagtggaga taaacaaaaatttcataccaagaacgtccagagaattcatgatatatttcaatattttttaagccaaaaggactaaagtt gtgaggagatatagataataaatttggaatgtcaaactaaagttctggctattgtaataaaattattattttcttctaac ctttcttgtaataattatggattacagttagagtacataggaagttgaaaatcaacttgtgttccctgtaaattgattga tacctcaattttaatttgatcattatgatgtgcaggaaacataggtgaatgctggcaatgcaaattggataacaacaaag cagataattcttttatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtactttcccaccaaagtaccaccacca gtactttaaaaactaagccctttatgtccaggacagcctaaaaaaataataaaacaataaaagtgccaataattattatt aaatagctaaattgtattagatcatccagaaattaatatgaaatgataaccaaataaaaatcatatgaaactacagtgca catatcgagaatgattattgtttttactgacattttgaggtgcccttgatccattcactgagactaactataagccagca ttcctgtcagatgaagatttaaagaaccttctcctggaaactgcggagggatttttatttgtggttggttgcgaccgtgg atgtcttctttatgcatccgattctattcagaattacctgaaccaaactcctgtaagtttattttgattcagttcttttt atacaggaataacagcaaagtcaagtcttgtactctgctacttttcatttgtccaacagcaaagtctagtcttgtactct gctgctattcaaaattattttccaagttctaggttttgtgtttcttcatatttggtgcattatggagcactatagtattt tttattggaccaacacctgttcaagccataatatttttaggatcctcaacctttgctttagttgcatcttttgcagtgat gatatgtctttatgaaaaacctaggaattttgcggtagctcttgtttactcaacatggttaatggcctattttcagtttc ctaccttcagggaatgtgatcagcggtgagtgaagcctcaaaaagggagagttgttagtgacttacctttttgtaacttc cctaagctgaagcaattctcttagtcaagtgagttggcttatggtttgcaattttgcccattccttcaaacagtctgatc ttgtgggacacagttttcttgatctaatccaccaaaaggacatcagcaaagtcaaagaacagttatcgtcatctgatacg acacctcgagaacgcctcatagatgccaagactggcctgccactcaaaacagagaaccaacaaacaccgacaagactatg ttcaggggccaggaggtcgttcttttgtcgaatgaagtgtggatctaaaggaaaaaagacgaaggaaggcagccaagata ctgaactttgtctcatgaagagaaaaagcaaaaacaaacaagctctagacaaaaagccttatgtcgtgggtgagtaaaga ttttttttcagcgagaagagtttggagggcactatcaaaccagctacggtgcttttcttcacatgagaggaaaatataac tgttgtgaacaaatcagtgcctcttgtactacaaaacagaaaagttgggcaagtggtcagttccttgctctgataaacaa caactattgctttgtcacaaaagtgtggtatcccaagttattttatgaaagatagtttaaattaactttcttaatgtgct aatagatgttataagatgcccagcattgtaagttataatatataattataacgtttattattaatagaacacaaataaat caaattaaatttggaaaataaggaaataagaaagctcatttgaggaaagtagcccttcaccaaagcaagtctgttagatt caagcttttgaggtcgtagggaatatattcggatttctcaatggccattactctagatcttcccgttccagttggtcaga tgaaatgctctgtatcactattcaaaattttttttttgtccccactctagctgtggacattaacattacttgcttttaag cttttttttcattacccactaagatttgtgtgcttttctagtccactgcactggatatttgaagtcatggcctccgtctg gatcttcatttgatgaagaagatgaagacaacgaatcaagaaatcttagctgtcttgttgctgttggaagactggagacc atttatgacgaaacgacagattactcgcagccaggcattgccaaagaatttatttcacggcacaccatcgatggaaaatt caccttcgttgaccaaaggtatgaaggttataagagattatgttgtcagaaacgannnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacatcatttgataaactgaagcagg ttgctaataaaatgggcaagaaaaaagtctggatctactgccttaaataaacttttaaaccgaactatcttaagtttcag ctgaagtacatactagttgccaaaagttcattaggtactgtataaaagctcatttacaagtaatatatacggtatgttga aataaccagaaataagtgggaaaaattagtagtgcaacgtcatggggaactctcattggtgtcgataagttgaggtttcc attaaattaaaagtatgccgatttcaatgagtttgatgcagtgttcgctcacctttctggtgaacatcaccatcatgttt ggcaaggaatacggacagtaaaggtcatagagtgtcctcatttctttattcctcaaagagataaaaacagtaacctcaga cccagccaaaaaacaggaaccaacagaaacactacccgtaatattacaaaggtggaccacgcttggacctcacgggacac catgtggctttaatcaattttgagcctgaattactggaggtccttgtttctcgtgtctcgatcctcgagacgatgaaggt cgagtggagaccgtcggcttacctactagctgtactttatttgcgtgggtcgttttaaacactcgtgtccacaaatacac acgttatttatcgtacagtcaattgtcccatttcctctaagaatgaacctctccatttcatcagtatgataattgctgac gtaatcattatttttagcccaggaattgttttagttttctcaacgaatagcgttcggtgacacttaatgacgtgtaaata acgtatatatcgggacaaatgcaatgtttgaagtcgagaatcagggccgaaaactcgaaggaatctttgcgaatttnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcattttgcgccggcattttacacctgtggagaaggac taatctatttgcgggtttgattaggagcaaaatccagcggtcgaaatcctcgtttcagcagctctgatagtgacgggggc gtcagcaatgccggtgccagcagaattggatccatggtcgccgaacaagttcaaaaccaggagtcacatgacaggtagct attttgtggaagccacaagaaagacgtgttgttgacgatgatgataactttcgacaatgactgtaactttggcttcggga acaatcaagagtgattatagtgacattactgattatgttgatgttgatgacggtgatagtcagcatagtgcttctgatag aagaaagtcgagggcagaaacagctctcaaaccacaatgccccttggaagtccttgtaatatggaagcaaaatgacatca tttttttttatttaccaggcaaagtggtggcaagacttttattggtaactcaaacgacgaaggcgcctacgaaactagtg tcacagcggtcgctaccactgttaatgtggacgatatttcacctaacgcgcccggttcctcgcggatgatatcagggcaa ggtgttggatcttcatcttgggatcatcagcgtcaggtatcacaggcgcacttgttggaacaattaattggaatgcagaa cgctattgaatccatggaaactccaatggaacaaagcgaagagactatgtcggtttttatgaacatgcttgaagcagatg gcggactagggggcgagtttgagggtctgccgtttaagtccgatagttgaatccacaaagcggaagaaacttcgcccatc tagactaggatgtatttcggagattgttatgatttattcgcaagtttaattgcgcaatagagctaattaaaattgctcgt acggtgtccgtttcgtccaaaacacaaactggtcatctttctcgtactctgacaactggcttggcaaggtagtgaagaaa acggatgtacgccagtaacgaccatgttagccacggacggtttgcgatcaaatttcatattctgtcatcatggctcacat caatttcttccttatagcaaacaaagcaagtgtcttagttataaaaagatgcactttttatactaaagaggcagatctgt gtgggttatgacggcagagctaaatgtgaaaaatgggtacagtccttggatggtatcacagactacttggatttttgctg gcgaagaaatgtagcattacaaaatagtttgtgatgtcatatttgggatgaaacccatgcttctatgttaacccatgtta actatcttggtataaagatattcctcctcgacaatgactgagggaaatcccaaaaaaattccacctgctcttgataggag tcaagtttttggcccttctattcgtagcctggatccccaataagtgagtttaacgacagatattcaaagaagaatttatg gtagaaagtgagaagatatgttggtgcagcatacaacacagttgctgttttataagttaaaaatgcaacaccagtcagtg gaatgaacaccagttattgcactctaaattcagccataaaacttgaagcttttcatatttaatttcatgtctatccattt ttaacgtcctacccagcaaaatgttttttgaagaggaaggattcatactccaaagtagtttcattgaaatagcaggttcg tattttcccatcaacaaagtaaacgcccgacagttttgttggaaaggagcaaaaaggctattgttcggttactgtcttaa gtttccgtatttctgacgtcggctaacctttgattaaacaggcttttacagtcttaaactattagctgagacatgactgt ccttcctcacccctcccctcacacatacaaaaacacatactgaatcttttccaagttaaccactttcttgtctatttcct gtattggtagttacacatgaaccgcttcagctgcagtagggaaacggatttttagtgcaaataaatattgtaatcgact |
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Protein
| Protein ID | aug_v2a.21671.t1 |
|---|---|
| Definition | - |
>aug_v2a.21671.t1 MPWMVLWVKRDEELKVRLSALDPFTETNYKPAFLSDEDLKNLLLETAEGFLFVVGCDRGCLLYASDSIQNYLNQTPSDLV GHSFLDLIHQKDISKVKEQLSSSDTTPRERLIDAKTGLPLKTENQQTPTRLCSGARRSFFCRMKCGSKGKKTKEGSQDTE LCLMKRKSKNKQALDKKPYVVVHCTGYLKSWPPSGSSFDEEDEDNESRNLSCLVAVGRLETIYDETTDYSQPGIAKEFIS RHTIDGKFTFVDQSSSDSDGGVSNAGASRIGSMVAEQVQNQESHDRQSGGKTFIGNSNDEGAYETSVTAVATTVNVDDIS PNAPGSSRMISGQGVGSSSWDHQRQVSQAHLLEQLIGMQNAIESMETPMEQSEETMSVFMNMLEADGGLGGEFEGLPFKS DS* |
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