aug_v2a.13603: Genome browser

Gene

Gene Model ID	aug_v2a.13603
Locus	scaf5569 : 14774 ... 16655 : -
To GenomeBrowser	scaf5569:14774..16655
Genes list of scaffold	scaf5569

Manual annotation

Study field	Autophagy
Gene name	vps15-8

Study field	IP3 pathway
Gene name	Adi-PIK3R4-8
Description	Named thus because a bi-directional best hit result was obtained by BLASTP searches. See Homo sapiens phosphoinositide 3-kinase regulatory subunit 4 gene.
mRNA evidence

Annotation by Blast2GO

Annotation	GO
phosphoinositide 3-kinase regulatory subunit 4	GO:0004674 GO:0005524 GO:0006468 GO:0006914 GO:0007034 GO:0012505 GO:0016482 GO:0035032 GO:0043231 GO:0044422 GO:0044425 GO:0044712 GO:0044763

Blast Hit to nr / sp

query	Subject ID	Subject Name	evalue
aug_v2a.13603.t1	gi\|632945103\|ref\|XP_007887869.1\|	PREDICTED: phosphoinositide 3-kinase regulatory subunit 4 [Callorhinchus milii]	7.0e-17
aug_v2a.13603.t1	gi\|676491678\|ref\|XP_009065673.1\|	hypothetical protein LOTGIDRAFT_132962 [Lottia gigantea]	1.0e-16

Transcript

Transcript ID	aug_v2a.13603.t1
Definition	-
>aug_v2a.13603.t1 gcgggctcagaccgccgaattcgcttatgggacctggcctatcctgaacattcacaaatggttatgggagcagccacaga tgttcagcgaaattttgttctacaatacaagtatgaattgcattttttctttgtgtcttaaaagtattattttcaagtgt catgacaataacattattgtttttgtaagtctgttgtcaatttttttgcttcttttcttttttaacgtttgttttccctg acatgaccaggatacactttggtttactgaatgaatttccagggaagtagggttcaataattccctgagaataataatat attattagtttggtacatcaacatggcagccaccgtattatgtgaaaagaattccttgggcttgtttcaaattgcacaaa aacaaatttatggcacaaagttgaccaatgtggtaacccttattctgtcaaatgggctcttagagctttgactctgaaaa catgtagattattcttctatgacacccccacaagttaaactgttatactgtttttcctgtctctaaggtcacgcctcatt gatggaactgatgtcctgcaagaggtgttttgcaattcacgtcagggtagtgtacatgaagatctccctcggcgaggacc tgagcacccccctgtggggcatcatgaatgcattaatgacattgcatttactaaattaccacaaaattacatcatatcgg ctgccagagacggagtgatcaagatatggaaatgagaaggttccaaacattttcagaaagctacactgagacactcaccc aattgtcactctgagaggttaaactagaatgtccacaggtctttctgtgtggattctccctttctctaaagtgaacaata cagttcatatattattcatcctagattcatttagtaaacattcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnng tgtagatattggagatggtcctcttattgacttaaaacnnnnnatataattcttacatgtttcaaatttatttgtgtttc cggaagagcttcaacttgcttattcctcataatagtgtataatctttcttgtgctaaaattgaagggagtgtagtgactt tgtgagacaactttctagtacaacattaaccgtaggctacaagtcgttgctaataattgacaaagcgttgataaatatga tccttctacttttgcccactcagggatatttcaccccagtcactttttgatcttaaagactactagtcttgtagtctaca caaatccttaagtgggatcttttcaactccttttaaagagagcctttaaactaaaggactttgtattctttataaatttt gtgtagtgagttacttaataagttgtttggaatacatgcagaaacctcttgcctaaaagaacaagttataatgatcaata ataattcttttcaggctgagatttgattaagcactgtactcttaagaacaaaagattaaaagaagaaccactgtaataac agattcttatgcgaaaaagattggggcatccaaataattagaaaaagtttcaaataatgtatgcattatcatttatgcaa ttattaaaagatatgcgagctatgtggctggtagtaatctgtactataccataccttatttcataaagaaattttattct aagagaaccgcataagaacagcaagaggctgatgactcactaaggcacctggtaaaaaataagaaacacaccagggttca gttgttcaaagcccgattacgctaatcctggattagtagaaattttaattgttatttatttacctttcaaggagggtttt cacaagattaaggtttaaggaaaacaaatttgcaatttataa

Transcript ID

aug_v2a.13603.t1

Definition

>aug_v2a.13603.t1
gcgggctcagaccgccgaattcgcttatgggacctggcctatcctgaacattcacaaatggttatgggagcagccacaga
tgttcagcgaaattttgttctacaatacaagtatgaattgcattttttctttgtgtcttaaaagtattattttcaagtgt
catgacaataacattattgtttttgtaagtctgttgtcaatttttttgcttcttttcttttttaacgtttgttttccctg
acatgaccaggatacactttggtttactgaatgaatttccagggaagtagggttcaataattccctgagaataataatat
attattagtttggtacatcaacatggcagccaccgtattatgtgaaaagaattccttgggcttgtttcaaattgcacaaa
aacaaatttatggcacaaagttgaccaatgtggtaacccttattctgtcaaatgggctcttagagctttgactctgaaaa
catgtagattattcttctatgacacccccacaagttaaactgttatactgtttttcctgtctctaaggtcacgcctcatt
gatggaactgatgtcctgcaagaggtgttttgcaattcacgtcagggtagtgtacatgaagatctccctcggcgaggacc
tgagcacccccctgtggggcatcatgaatgcattaatgacattgcatttactaaattaccacaaaattacatcatatcgg
ctgccagagacggagtgatcaagatatggaaatgagaaggttccaaacattttcagaaagctacactgagacactcaccc
aattgtcactctgagaggttaaactagaatgtccacaggtctttctgtgtggattctccctttctctaaagtgaacaata
cagttcatatattattcatcctagattcatttagtaaacattcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnng
tgtagatattggagatggtcctcttattgacttaaaacnnnnnatataattcttacatgtttcaaatttatttgtgtttc
cggaagagcttcaacttgcttattcctcataatagtgtataatctttcttgtgctaaaattgaagggagtgtagtgactt
tgtgagacaactttctagtacaacattaaccgtaggctacaagtcgttgctaataattgacaaagcgttgataaatatga
tccttctacttttgcccactcagggatatttcaccccagtcactttttgatcttaaagactactagtcttgtagtctaca
caaatccttaagtgggatcttttcaactccttttaaagagagcctttaaactaaaggactttgtattctttataaatttt
gtgtagtgagttacttaataagttgtttggaatacatgcagaaacctcttgcctaaaagaacaagttataatgatcaata
ataattcttttcaggctgagatttgattaagcactgtactcttaagaacaaaagattaaaagaagaaccactgtaataac
agattcttatgcgaaaaagattggggcatccaaataattagaaaaagtttcaaataatgtatgcattatcatttatgcaa
ttattaaaagatatgcgagctatgtggctggtagtaatctgtactataccataccttatttcataaagaaattttattct
aagagaaccgcataagaacagcaagaggctgatgactcactaaggcacctggtaaaaaataagaaacacaccagggttca
gttgttcaaagcccgattacgctaatcctggattagtagaaattttaattgttatttatttacctttcaaggagggtttt
cacaagattaaggtttaaggaaaacaaatttgcaatttataa

Protein

Protein ID	aug_v2a.13603.t1
Definition	-
>aug_v2a.13603.t1 MGAATDVQRNFVLQYKSRLIDGTDVLQEVFCNSRQGSVHEDLPRRGPEHPPVGHHECINDIAFTKLPQNYIISAARDGVI KIWK*

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OIST Marine Genomics Unit since 2008