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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDaug_v2a.11534
Locus scaf4501 : 53127 ... 58805 : -
To GenomeBrowser scaf4501:53127..58805
Genes list of scaffold scaf4501

Manual annotation
Annotation by Blast2GO
Annotation GO
double-strand break repair protein mre11a GO:0000014 GO:0000019 GO:0000724 GO:0000737 GO:0000781 GO:0000785 GO:0003690 GO:0004003 GO:0005654 GO:0005829 GO:0006284 GO:0006289 GO:0006303 GO:0007004 GO:0007062 GO:0007095 GO:0007129 GO:0007131 GO:0008022 GO:0008283 GO:0008408 GO:0030145 GO:0030870 GO:0031573 GO:0031954 GO:0032481 GO:0032508 GO:0032876 GO:0033674 GO:0035861 GO:0045087

Blast Hit to nr / sp
query Subject ID Subject Name evalue
aug_v2a.11534.t1 gi|472386261|ref|XP_004412484.1| PREDICTED: double-strand break repair protein MRE11A isoform X2 [Odobenus rosmarus divergens] 0.0
aug_v2a.11534.t1 gi|591304638|ref|XP_007079098.1| PREDICTED: double-strand break repair protein MRE11A isoform X5 [Panthera tigris altaica] 0.0
aug_v2a.11534.t1 gi|116283349|gb|AAH17823.1| MRE11A protein, partial [Homo sapiens] 0.0

Transcript
Transcript IDaug_v2a.11534.t1
Definition-
>aug_v2a.11534.t1
caaagcgcgagatttaagatggcggtccagtaagcttcctcttcctttcgatttattcactacttagttgcaattgttat
cttatactccaaatattttggcttggcaggtcggatgcagatccggagaatacaatatcagttcttgtaggtgggtagaa
gcacgtaaatgtgtgcaaaatgtcgcaaaagtgaatttcccgcgaaagttgctttgaagatcgacataacttgtgcactt
tcactttagccacagattgccatcttgggtactcggaaaaggatcaggttcgtgggaacgattcgctgtctacatttgag
gaaatactacagatagccaaggataaaaaggttggcacatacaattattgttttccttgattgaaaaagatcatctgggt
ccagttgttcaaagcccgattaagctaatcctggattagtggaaattttaattgctatttatttaccgttaaagacaatt
tttcacaagattaaggtttaaggaaaagaattttgtaatttataaccttattgagccacaattttgtgccaaatcctcct
ttaacagtaaataaatagcatttaaaaattattataatctaggattaacataatcgggctttgaacaactgggccctggg
tgataggagtcctgagaaggactgttgttagtgactgacgtttcgacaacctgtgcggaagccatcttcagagtcaagtg
gtagtgttagtcagttgaaaattatttcgttgaaaatgatttcagttgaaaattatgtgggcacattccctgtcagaaat
tttttgaaatttggatgctcaaaggttccatttggtgcagttaggggggatctgaagcgtcaaaattgtatttcatttgc
acaactaatataactaaaggtatttttaggcattcatcacatgttatcggaaaaaaatgttacatctggattgtttcggc
gttgtttgttttgcgataatgtttagttctcatcaatttctccaaaaaaaatttccaaccttgttatgtgtgatgtgaaa
cttttttttttgaggatgataagggtggtttaaaagcagagtttcattcacaaatcaacagataaatgtgacgtaggcgg
tcaaaaaccaagacatgttgcggaaattttgcacaacagccttttttaattcaactcttaacatcattcccaattttcgc
aatagttttgtaatattaatttacaaatatatatgttgtcatttaaatttagttttggtgcaaaatttttaaaactcagg
ttgaatttctattttcttttgtcatgtattcattaccataatatggaacaatggcaaataaaattgaaaccagtttaaaa
acacattaaaccaaggataaattctttaaaccacaacatatattaagtaatttttttattggtatgtcacaaccttatga
catcattatccagacagaatcagaaatgtgtgaaatgttccctttcaaaagcaagaacactgtccacacataaacttgca
gagttatgggccatgacttttttctagcattttcttcatcattgatgagccaattctaaaaccaagaatctttattgtag
atgctttaggtcccaaggcactgtggctaaaagtagcgcaaaagcctacaccccacttctatttcaatcttgtttgacgg
ttgagtttgttaatttgtgttctgttttatatttttatccaaattcaggtcgacttcattttgcttggcggtgatttgtt
tcatgagaataaaccatctcgcaagacattgcatggtaccatggcaatgttcaggaagtactgcatgggtgataaaccct
gccagttagaattccttagtgatcagtctgtaaacttctccaattccaggttagacttatcaagttttttcatttttcat
ggatcttatttttttgttttgagcttgatgacaagattgccactttcacatttctcataaacataccagtcnnnnnnnnn
nnnnnnnnnnnnnnngctgtgtaacatgttcaagtttgtaattgaagctactgtcaataaatgatgttctggttcaaatt
acatgatattcctacnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaattaagcatatggcaccatcatcatgcaacaaat
cttgtgaacaaattatgttattatggcaaacgctgggtgtcacatcaatgatttatggaaagcaaggcctaatcaaggtt
caacttgtactgcaaactgtgttatagctgatattttatcagttggcatagaaatgggtgtgttgtaggttaaaataaag
ttgggatcaaagtgatctcaacctgaggatgtttgatttctaatttctttaaattttgcatttagcaccttgattcatta
tcgtaaataagtaataatattattaggagtaaaattggaaatcaaactggattgaagtcatttttgcctgaaacccattt
taacttacaacaggtatttccttcaaagtaaatttagatggaatgtaaaggcttggctggcttctttttctgaaactcct
tttctataatttgcttgttagcatttagacacagtcgtaatgatggtttcccctgtgatatgcatgttattttccttttt
gatacaatttgatattctgggtgagtgtcaaggctttggaaggactgctgctgataactgtcatttcaactaccagagca
gaattcatctgaggaatgcattcacttttatgtgaaggtgatttccactcatgttgtgcagagctcaaaactaagaaaca
ctacagtgagaaacaaaacttaagtcacaaaatgaaaatagtatgtcaagttttaactaatgtgttgggaaaaagtctgg
tcttttcatttacaaagtgactaacaaacaaattttttgttgaaaaaccaagaaagttagtagctttcgggactgtatca
gtcgcaacttccaaccctgtcagggaaactttattcactcaaaacatttgttcttagagtttcgctcactaacccataca
attattggattctatcatggtatgccacgcctgagttgaaaccattttcaatgttattatattcactacatctccatctt
gattgctgagttaattttctgtctcacaataataattgtttcacaacaggatcatgcatcacaatgtttcagccgctaca
ctgctgatcttcaccaagtgatggtgtcgactggctacctgccagtataagtagcaccatggttggtgatgattggtgca
tttagatcctctcttgggctgttgttgatcggagtatttcgatccttgtcattcagactagagattgttagctcagtggt
ctgcttgttcttgagcaacttagctgtaaattgtcccaattgtgttccaccaatcaacaacagcccaagcacggatcaaa
atgtaccaatcattgccaaccacattgctacttatactgacaggtagccagtcgacacttttgcctgatgaagatcaact
aagctatcattacttaaccacaataagcaacaccttccatgacatcccaatcttatgatgtgaatatgttggtaggttcc
ctgtggtgaattatgaggatcccaattacaacatatcaatcccagtattctcgatacatggaaatcatgatgatccagct
ggggtgagaaatctttatttactttacaggctttattatagaaatcctgtaaattttgtggagcagattatgtggaaaga
aagaactactgaagtatttggaaaattttgcacattgtgcaattttagttttatttattataaaaccctaaaaaacattt
aaaagctttataaaatatctaaattctatgtgcattttgattggttgctatctatgatctacaggaggacacacacataa
atgacgttactgttaacgctttcactaccttattgtataaaacaaatagattccatgttgccatgtgtctgttcagtaat
agatcacagaagacgtcaaaatgtggttagaacatcattgacacttgcataacagctcttgtgccacttttttgttctta
ccacatactctatcgctaggatttttcccccttttaatagtacatgcatttcagatggttcgattggtcgttactttata
gaacaggctcctaccaaccaatagtttttctgtgtaatagcttgaaccagacctctgcactggcaacccaaggagataac
accttgagcttccttttaaatgtgcaagcaccgattggaaagagttttacagctttccttaaggtgaatcgcattaattg
aaaaggcatacagatgtgagactttccttataagatgattgtacatctttttgtgaattgtgttaaatctgtttaaaact
gctatctgccttcttattaattggcaacctgtgctcatgaaaattatttcaaaccctcttcacctgcggcagttctcatc
caatttctttaaatttcatgtcaatggttaatcctccaggagctactgtagactgtaataattattaggattcacttcaa
ataagtccttttatgccctgagttaagtacctccttttcaaattattttttttattgcttattgactgttcataattatt
atcctatcttaggatggtaacctgtgtgccctggatttgctcagtgtgtgtgggtttgtcaattactttggtagagctgc
atccattgatgatatcacagtgtcaccaatcttgattcagaaaggtagagccaagctggctttgtatggtctgggatcta
ttagagatgagagactacacagaacatttttgaaccagaagattaaaatgttgagacccaaagaagattcaaactcctgg
ttcaatgtttttgttctacatcaaaataggtatgtacatgaggagtaacaattattgaaccaatctaccttccttcacct
ccttcaggcgacccttcccattgttaaaatttctataatagctatagaaaggaaagtcaataatgtacagaacttttttc
agaaaattcaatacaaccgcattcactaatctgacactcttttgttctttctaggtcaaagcatggcatgacaaactaca
ttccagagaaatttttagatgactttcttgatctagtgatatggggacatgaacatgaatgtattattgatccaaaggaa
tcagaagacccaaatgtgtccttttatgtaagtcagcctggttccagtgtggctacttcactctgtgagggagaagccaa
gacaaagtaagttacaacaacttgtcaaactgaatccatagagtgagctaaagtgttgcaatactagtttttttttgttc
cttttaagtgcttttaaatattattgttccttgactgtaagtggaaaagttgttggacaatgagctttttatctgagtat
tcttgtaatggctgataaagagtgagggagagttagttaaaaccaagtagtaaactaagagtggttttccccattgtgac
ataaagtgtaaattgaatattgacgtagtgagaacattaaaatgccaaatgtaaaggttttaatttgggtcctgtttatg
aacataatattttgttgttccaggcatgtagcaatccttgaaataagagagaaggggggcttccgaatgaccaaggtta

Protein
Protein IDaug_v2a.11534.t1
Definition-
>aug_v2a.11534.t1
MAVQSDADPENTISVLVATDCHLGYSEKDQVRGNDSLSTFEEILQIAKDKKVDFILLGGDLFHENKPSRKTLHGTMAMFR
KYCMGDKPCQLEFLSDQSVNFSNSRFPVVNYEDPNYNISIPVFSIHGNHDDPAGDGNLCALDLLSVCGFVNYFGRAASID
DITVSPILIQKGRAKLALYGLGSIRDERLHRTFLNQKIKMLRPKEDSNSWFNVFVLHQNRSKHGMTNYIPEKFLDDFLDL
SAWFQCGYFTL*

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