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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDaug_v2a.05503
Locus scaf2009 : 14516 ... 20330 : +
To GenomeBrowser scaf2009:14516..20330
Genes list of scaffold scaf2009

Manual annotation
Study fieldImmunity
Gene nameAdi-TRAF-6-2

Study fieldApoptosis
Gene nameAdaptor TRAF family28

Annotation by Blast2GO
Annotation GO
tnf receptor-associated factor 6-like GO:0006355 GO:0006955 GO:0007165 GO:0010604 GO:0016567 GO:0019899 GO:0031325 GO:0044093 GO:0044424 GO:0046872 GO:0048584 GO:0048731

Blast Hit to nr / sp
query Subject ID Subject Name evalue
aug_v2a.05503.t1 gi|556948317|ref|XP_005987021.1| PREDICTED: TNF receptor-associated factor 6, partial [Latimeria chalumnae] 0.0

Transcript
Transcript IDaug_v2a.05503.t1
Definition-
>aug_v2a.05503.t1
gatttgtctcaaaacaaaattaacattatttgcgcagaatcatttccaagattgccatcaatgtcctttgtcttgtgaga
agtgcggaaaagaaaacattccaagaaatgaggttagttcagttttgttggaaaggtgatgtactctcagtgacttacat
atgtctgaaccacacaaatggagagtgctttttgcatgctctgattggctagcttgtaggagaaaagttaagtccttcgt
tatcttctgacgcagcgaaaaaaaattggaccccaggttacgtcatccagcagttacaactttcgtatgctatttacaat
taaaatggtatgacagggcgcgtgagcgtagcccgctgactatagtgaaaacttaatataaagatataaacttaaaattt
aaatcatatgcaaaaattgataaaccatataggatctctaaaatctaaaatggtagttgcacaatcattaaaatctttaa
aattctctcaaatgtataacttattcggctgtcaataatttccttgatgattaatggaccggaaaatattgaaggaagga
aattaataaatggagggcgatagtcattgttcatgctgcaactttaaacgtccgagagatgttaaatgttcccgagatta
cagccttctgcatattatgaagaattcccttactcttacttaattccgaccaatttgttcaactcggcttctaagtctcg
ggaccatccccctaatacgtccattatgatattatattgttacactttgtatccttggtagttctgctttaattaacgtc
nnnnnnnnnnnnnnnnnnnnnnnnnncaaaaaatctttattcaatactcgtaaaaaagacctatgtacagtgcttcactt
aaaaagaattaagtttgtaccttaacatctgttaaaaagaaaagaaaaatcataatgtctcaatatctcttgaactatat
tccacgaaaatgtttctctactaattattacgattactattagcaatcactaccaatatttaacatcttttcactaattc
ctctttaaaatctgctacggtttcaacatgaatcaacaaggataagaatattaagtagtagtaataaatgaatatccaat
attcaatatcttttctctaaatcaaaatctagcgtcctaaaagtcctgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnngaagtaaggaaacacatcaatagtccgatttaatggctccttcaacaacttcgacgtcgatatcaacatt
cttaatgtcacacggcactcttcttgtcctagagcctcgaagacaaaccgacgcagatttcaagagtgcgnnnnnnnnnn
nnnnnnnnnnnnnnnngttgtagtagtagtattaattacttaattgattactagttgtgtatcagcagtggatgattttg
attttttgttctccagatgcaagatcacaacgagaaagagtgtccaagggtggagctcaagtgtcctttcagtgttgtgg
gctgtccatttgaggtacaataagcatttttttccccgcaaaataaagaagaggcagcgttattgtaaggaattaataga
taatgacgatctaatttagtattcttttgttatattgctaataagcctttctaaccttgctactttgggcaaacatttga
ttaaaacttaaaccaaagtaaggccagtagatgtaattaacataaatctataaaataaacagaacattacttggccgcgc
ggggacacagattttatcttcaagtatcacgagtgagcgaagcgaaggagtgaggccccgtccacacgaagacgattgta
aacgcaaaagctagtaaacgcaaacctttttatgcgtttaggccttccgtccacacgaagacgatgaaaacgctcaccgt
aaacgcataaattcgaaaacgctctccaaagtagataaatttgaaaacgccgtttatgcgtcttcgtgtggacagccgta
agcgtatattttcgcaaacgtcgtgaaaacgctgacgtcagatgtcagcgccattctcttttatcgagtggcgctgaagc
aaagattgcaggctaaaattgataacgcatgcgcgttcggtgtatgacatcgttttatgcgtttacgagcgttttcttgt
ggacgggtgaaaacgccacgtaaatgatgatcgtattcttgtgggcggagataaaaatatgcgcttactagcgtttgcgt
ttacaatcgtcttcgtgtggagggggcctgagagatactttcagcacgagaagataaaatacccatcccccagcggccat
gtaatgttctgtttattttatagatactgataaaatgtccacatttactttttttcattcattttcgaaacagtaaaaaa
ctgcaattaaagtggtcacctatcgcaaaatgcctgtcaccaaaacgttatgaaactcagagatagttataaaggcgatg
taatgacaataatacttatatttgccgtttcaaaaagtccaaattctattgaagaggagaaaaattctacaacagcaaaa
gcgtaactcaaagaagccattttgtgattgaaatttggaaagggccggcggcgcgcttgagcgagaagctctcttgtaat
tggctaagcatgcctccagccattgcgacaccaatatcctcacacgtaaatgataaaaatagtatcttcaccacgcgcga
tgaagatatgttttttttggtaaaagggaaaatcttggtatttcattagtatgtatgtaataatagaagaggtgtaactt
tttactgtggggataccgactccatagtttatttgcaccattgatttctagttggacaagagtgcatcctggtttttttt
tgtcttgtttgtttgctgttgttgttgttttttcacgtcgggtatttgattccttcaaaagggaactcgctcagcagtga
atgaacatgttaagcaacaggtgttcagtcatttgatggacctcacaaaggaattcggagcattgaagattgagcggcca
ggcctccaagcaccaaagagtctcgctcgacgcaccaggggtggggtagaagcccaggagaaggctagtcaagacgtgct
tctcatgaatttggcgacattgtgtcaacaacagcaaacggaaatcgttggattgagacgccttgttaatgatatgacag
gcatggtggagcgtttggaacttcgccttaatgagtcgtgcatgagagtggaaacgccgttgcaagaacttactttcagg
ttggtgaggtgttacgtgatcgcgcagtgactccttggaaatccactgctcgaggtgctaacagccatcgctgctacctt
tgttgcgttcgcacggcgtaagctctgtgtcagcgatatgaacgagaaattcgccattccttctaggctcctgagatctc
agaattcttttgccgcgagcttaatcgtaatctattctaattgttcacggtgttaatggtgcaacagtaactaagaggca
gtcatacgttaattcgtcgacataagtgaggggctctaatcttttgcagatggcagtactttcctcgactgtttcctagc
actggtctctcaagggattccatcccgcaactgcccgcacggttgttcagtacgttaccaactgatccactgcaggcagt
gaatccacgtcttcagtgatctcaggaatcacggttcaaactgttcgagaagatttgactcatcagctctgttggaaaga
tgtttgaatcgtatgtgaccagcaataaatggttcttatttcagtcagtcttgcagcacgagctggtggatttccgaaat
ccctgttatgagattcgttccggggaaggtgcaaaatttgcagaggtgaagcttcgctcagccacgcatctgcttctcat
aaaaacacgaaaatttgggttatagttatttggtttttatctctcgaaatagctatcaaaagaagtaaagaagtaaatga
aattctgagttgaaatccaaaaactttcgaagaggtttcgcaaaaggcaatttttatcccgacctttgccgcttcctgga
aacttgaagctttacctcttaagatcttttcgcctccgaacccgggtcgattcaatgccagaatcattgcaagcgaagac
atcgcttgagtatagtaacaagagttttcatatcttggatgagctctctttgtccacgacacgtttttgttcagttgtgg
tgtcttttgctacagtgcactaaatacaaaaaaaatcttcgctgtaaatctgatgggttgtttctgtggtaactgcatga
gttaactcctcttaattctttctagtctttctcgaacaaaaaacacaaagtgatcagtatggtcgcaactgaataaaaat
aagaaattttaaccatgcggccgaaggataaaaatccgctctcttttattaggctcaaccgtcaagaaacgagagggttt
gagttcgaaggccgtgtgtgcaatggctcttacacctggaagattgaaaactaccgacagcgtcgccaggacgccatcag
cggcattgcaacggccctacacggcccagccttctataccagcctctatggttacaagctgtgcttgcgtattaacttga
atggcgtggacagtggagttggaagatacattgctctgtttgttcacatgatgcagggcgattatgatagcatccttgag
tggccatttaccgggaggatcacccttgctatcttggaccaatccgaaggaaccgaatttcgtcagcacatcagcgagac
ccttattgccaagcccagtctactggcctttcagcggccaacagctccgcgcaactacaaggggtatggctacgtggagt
ttgctccgatcgagcacatctgcgatcctcagtacattaaaaacaataccatgctggctcgcattcagattgatcattga
gaaaccattcgcactaattcatcatttatggcctcaagcgcggatgtggtggtatttgtggggttggacgccatgtcatc
ataatagttcagttattttctttttccatgtccggtggagacttttggacaccgttttgttcacgttaggattaataagc
aattcatgtcatagccttttaagtgagtgctcaagaacacagggcttcatttcagctagcacagtaacaaaaaatcatga
tgcaataggccactttcgaatggcgcaaaaacaaaagggcagggtcgaggctgagaggactagtttgcgatttcctttga
aaaaacaaagaaaaatgcaaaattgccctctcaacgtgactttgttcttttgttcttccacatttcgaaagtggcctgtt
ggcgaattgacgcatggttttcacgttggacaaatagaaacatgatcgcgaatcacttcgaactgataagaaagaaaatg
agaaattacagaagatggttaaaaacccatttggacaacgtttaaaatcaacgtggcactttaaattgcccagcatacct
cgtgagatacgttcggcacctctattaagtttggcacaagtgacgagtaagcatttttcttatctttcatagataaccct
caaaaattagtttggtatgaaaatgccacgttgatttcatgttgaaggcatgcaaattaccaatattgaagccccaaaat
aaaaataaggtcctttaggctcacgtgaaaaccaggactacaaagtagggctggggctaactaatacgccgatcagtttg
ttatcatatgcaccctcccatccacctatccggggaataaaccgcacaagcactg

Protein
Protein IDaug_v2a.05503.t1
Definition-
>aug_v2a.05503.t1
MQDHNEKECPRVELKCPFSVVGCPFEGTRSAVNEHVKQQVFSHLMDLTKEFGALKIERPGLQAPKSLARRTRGGVEAQEK
ASQDVLLMNLATLCQQQQTEIVGLRRLVNDMTGMVERLELRLNESCMRVETPLQELTFRLNRQETRGFEFEGRVCNGSYT
WKIENYRQRRQDAISGIATALHGPAFYTSLYGYKLCLRINLNGVDSGVGRYIALFVHMMQGDYDSILEWPFTGRITLAIL
DQSEGTEFRQHISETLIAKPSLLAFQRPTAPRNYKGYGYVEFAPIEHICDPQYIKNNTMLARIQIDH*

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