Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDaug_v2a.04463
Locus scaf1643 : 30239 ... 37465 : -
To GenomeBrowser scaf1643:30239..37465
Genes list of scaffold scaf1643

Manual annotation
Study fieldApoptosis
Gene nameAdaptor TRAF family19

Study fieldApoptosis
Gene nameAdaptor TRAF family20

Annotation by Blast2GO
Annotation GO
tnf receptor-associated factor 4 GO:0005488 GO:0044699 GO:0050794

Blast Hit to nr / sp
query Subject ID Subject Name evalue
aug_v2a.04463.t1 gi|641764109|ref|XP_008167225.1| PREDICTED: TNF receptor-associated factor 4 [Chrysemys picta bellii] 0.0
aug_v2a.04463.t1 gi|126313917|ref|XP_001368795.1| PREDICTED: TNF receptor-associated factor 4 isoform X1 [Monodelphis domestica] 0.0

Transcript
Transcript IDaug_v2a.04463.t1
Definition-
>aug_v2a.04463.t1
aaattcttactattggatgataatggcggaagctcaacaaaatcctttacgacttggcggatacaatgacgaatttgtag
aggagatagaggacgattacgtttgcccaatatgcacgctgcctctaaaggaagcggttcaaacaaggccgtgtggtcat
cgattctgcaaggcttgcatcgatgctcatttcgcaaggtaatgaaggtgtctaacacgtattttgactgatttcaagtc
ttagcgacgctaatagcgtgaccttgttagaggagaattcgaattggcaagaagcacctgccgaaaaaaaaagaatatga
ccgtacatatgccgaagattgcaaaattttacccgtgttatcctttctcgggaatttaacactttcgtgttgtcgagttt
tcccttcgtattacttcagtgtattcaaccgtgtttaatcgatcccagatttaggagaataagattaagttcagttgatt
ttcttattgattcctccccttgcagtaaatgaccaacatttcaattttttcaaagtaagtattgaaaatactgtttgaag
cgaaagcgaaaccgcttccgtgctggcagcaacacgtttcgaacatagactgagtctcgtcaccagatgcaactggggaa
cagcttcaccatgactctgggtacgagagccagtaacgagtaacagcgcacaaagttctttcaaagcgaaaggccgcaag
tgtttcagagtgaaatatcacacagcttgtatagagatgtctgaaacggattaattcataaagggatcttgagtggcttc
ttggaaaaaggaggatcacggatcaaggatcactggagcaaggatcaataacaaaaaggacgccttgtgaataagatata
tggcattattaacagttaatatttaatagttcaattattgtgtatatgtccagggcccttggtatatgtcgttaaacgcc
attcggcaaaataaatgattgaactattgtttggcaattagttatgtacccctaggttgctgatgcaagatgagccgaat
gctcaaaagagtgttgttgtttgaaagagagcaacagaagcaaagtctgaatcaaaactaagggttgtaaaagctcccta
aatgatgaacatagcacacacaggtacaccacttcgtggaagcctttcaaatacagtacaactgaggttcagtgatgaaa
tactgacccaaattcattataaagcaagtccctccaacttcaatattgcttttaatgcaaattttgcaactacttttttt
gaaaatgttcctgaaaatcttctatactgctgaatggaggtttacaatgctggaaatgattcgcggaagacatgtttata
ttaaattttgtaaaacccaaaaatggtttacgccattagttatttttcaacaggcaagaaacagatggacaacaattaaa
ttgtcctggatgtcgaagcaatcttaatagagatcaggtaagtctcaaccggttgatttttgcatgcatgacactgattt
agtttaaaatatgaaagcagcaccggacaaactagtagttccctccccaccccctgctcgttattttcctttggaaaaaa
aactacagcggagaaggatggtcccagagaagggaaaaaaacagaaaaaaatgtgttacgtcataggaatgtaatactgt
acgtacagcccttcagccaatcatattagggaactaatatttattaggccacggcgacgacagaaacaagaatgttgcaa
acttgcatatttaacgatgaaaataccgagtaactttccacgctttgctcgtgcgtttttctttttttgtacatttcata
gccgttctcgtgctatctgcgacgttaaaagagcggttttgcagtcatggcgacgaagtgagcgctggacaacaaatttt
caaattgttcttctaatcccgaaaccactgatcccaatttaattccagggtacttagagtacattttacaatcgtaattg
tggaaacgcgaagatatattttcagatgacgctttcgctgtttttaacgtcatccatgcttaagctctgtattattgggg
atttgtggcatcgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcaagctcatcgtcttgtcttaaataggaccatttggcatcttgtcctc
atgaagtcgtctcttgtacaaacaaaaactgtaacgtgaaattggaaaggaaagggctacgagaccacgtgttaacaaag
tgtgactggagaactcttcggtgcaaattctgtcctgtgtcacacccagcgttgcagatggaggtacacatatttccttg
ttgttggttctcgtactaacggtacagaacccatattgtcgtcatattcatctttttttttccagctaaaatttcgctga
ttttcaaaccataaaggtttaaaattcgccaggtagtcaagtttaacaaattctttcaacttttgaagtcagtttgtgag
acacaaaatatcttttgaaagcgttattaattatcaactaaagtaaacaacgacgtgaggaaaagtaaatattgtctctt
attttaaaccatcacaagaagtgtgggaacatgtggcgacgtaataataaaaatttatggacaagatttatcaaagacaa
caagtttttcctgacgctaggatcaacggtacttcttaaatgnnnnnnnnnnnnnnnnnnnnnnnnnnnngatatatttt
atttgtgtttttatatttgtgctgttacactctttcaggctcatcaagaagtttgtccgaaatttccacttacctgtcca
cagaaatgtggaatgatacttttgagggagacggtaggttccaccttttgcaactgttaaagtttcatttttcttggttt
ttgtttttctttttttcagttattgcttcgtgtgtctttaagcgagacacgtccagcagtgcaccctattagatgcatgc
tggcttaaataagcgttacagagtgtcccctcatccacgtcacgtctgatgaggaataaggtctatcatgataaaggtca
tgaagtgtcctccgagctcttctccctaaagaggcaaaaccagtaaccccaaacctaacctaaaaaagaatgcaacgcaa
accctgacatcaaaaaagtggtttacgctttgacttaacgagaagctcacttgaacgtttatcaaaattgacccttcatc
tactttcatgcagttttggacatggtgacaaattattgcccccatcattttggcgtgaaatttagaattcacttgtaaat
tttgaatttgctatggaattcattatacacggaaaaaaacctgcgtcttatgagcgttatttgtcatccatggtatttaa
agttaatgaaatagtgacaattgaaactatagcatagccaccgaaatagctcattttgcttacgtcattagcgttctcca
taatcttatggactcacgcaaatcgcgcaaagaattcgttacatttcgtgtcctcatgcttgtaatggatatggatgatc
tagaatttgatgaaataatggaaatgttgtaaaacaattgtttcatggttagtttgcatcggtcgagttacggatgcact
tgggaggtcgctaagcactcgagaggcgcctcgtgcgactgctgcgcttttctagtgcttattgcctcccccgagcatcc
taaccatgaaccaattattaatctggcaacaatttcacttttgttgtccaaaatctggagatttcccccacctaggatgt
tgggaaatcatgacaatttggccgagacttgagtgagacgattcccgaatttcactcgtcgccatttgtatacataccta
ttctcaatatgtttgtgacagatcgataaacataacgagaaccaatgtgcattggttgagatttcctgtccattttccaa
acttggctgtccagaaaaggtgagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnctaagagttgttattgttttgtgacaacatacaaactcgcacccatgggaaacgc
caccgtctcagtggatggtactagggagtttaagaggctacgacggctacggcaacgaaaatgttacatcaaaataatcg
tttgcgttgggttaagtgttttgcaattactcagagtgctggtcatgtttttcaaaataggctcagtgttctttcacttg
attggcacaaatagttttcatgcaaaggaaaagaatgaaagatttaccgctgcgggctcgcgtttatcgtcagaacctca
aaaatgaaaatttcacgtcctcgtttggcagactacgtcaaaaacgcagcacgattatttttcctcattcaaccaatcaa
atcattgatttgcggcgctgtcgttgccgttgccgtcgtcattccctactgtaacgaagaaagaatggaatcacctctga
cgtcattgcttttatacgaatttcattccataaggcgtatttcaatgcacaaatgcactttaaaagtttagcgttgttca
ttttgacttccaccccaattttaaggatgatgatttcatgatctgcgttaatagtaagtttaagtaacgacgtcagcaac
gttaacggaaacgccgcaaatcaatgatatgataggttgaaatgtcaaaaatgatcgtgctgcacgtgcagcacgcattt
ttttttacgtaatctgccaaacgacgacgtgaaaattccaaatttaggttctcacgacaacccgcatggagcagtaaaca
ttccattctgtgccttgacttgaattttattcgtgccaacctgcgacacgtcgctcatcttgtacaatttcaccaaagta
aaataatcgtaaaacacttatccgagcgtttcattttgaagcggcagttcgctgcagcaaccgtcgtacgatcttaaact
ccagaatattatcgatcaaaacgaatgatttgagggccgtgaaagcagaaaatacgcccttacatttaaaatgccgaaat
gtgaaatcacaactgaagcaatgttagctggtttttccagtcaaaattttatggatcgctgatgggaaaatcagtcgata
ttcaatagtcactattctacaataattatttggaggtattattagtaacccatgatacaaaatgaatccggtgcaaacaa
aggtctcagtgatgtgtattaatgacattttcctcttcagtttcagcggaaagaaaaaatgcgacatcttcaatcgtgca
tgcaagtgcaccttgacctcgcttgtaaagcgttaaccgacaaacaagaggaagtcaagaaactagagaatagaatcgac
gcactcgaaaataggatatacacatggaagattgggggctttgaagaaatcttgagactagccaaaataggagataacgt
ttggattgacagtgatccattttatactagagaatgtggatataaattcagaatgcgcttgtatccaaacggctgcgccg
agggtgaaaaaactcatttgtcgctttccttagttaacatcgaaggtgaatacgatgctattttgcagtggccgtttcca
aaagaggtaacgttaatattgatcgatcaacaagaaaagctagatgacagacagacagtctatcgccctttgacaagaac
agaagaaacgtggaggttgaggcctaaaaaaggagaggagacttacagcggattatttaaatttgtgtcacatgatgagt
tgcagaaaagatcctacattgttgaggacaccatttttattcaagctaaattcaaataaactgtatagttaatactgtat
agcatgtttttcagtcaatagtagtgatgttcgacttagcccagagaacgcttttgacagaccacccgcggcttttcccc
acgttcgttcgttcatgaaaaggattcaaataactgagatgagttaaactacaactcccttgcacatcatgaaatatcat
tatcatataaggataaattcaaatcct

Protein
Protein IDaug_v2a.04463.t1
Definition-
>aug_v2a.04463.t1
MIMAEAQQNPLRLGGYNDEFVEEIEDDYVCPICTLPLKEAVQTRPCGHRFCKACIDAHFARQETDGQQLNCPGCRSNLNR
DQDHLASCPHEVVSCTNKNCNVKLERKGLRDHVLTKCDWRTLRCKFCPVSHPALQMEAHQEVCPKFPLTCPQKCGMILLR
ETIDKHNENQCALVEISCPFSKLGCPEKFQRKEKMRHLQSCMQVHLDLACKALTDKQEEVKKLENRIDALENRIYTWKIG
GFEEILRLAKIGDNVWIDSDPFYTRECGYKFRMRLYPNGCAEGEKTHLSLSLVNIEGEYDAILQWPFPKEVTLILIDQQE
KLDDRQTVYRPLTRTEETWRLRPKKGEETYSGLFKFVSHDELQKRSYIVEDTIFIQAKFK*

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495