Gene
| Gene Model ID | aug_v2a.02421 |
|---|---|
| Locus | scaf795 : 406 ... 7760 : + |
| To GenomeBrowser | scaf795:406..7760 |
| Genes list of scaffold | scaf795 |
Manual annotation
| Study field | Autophagy |
|---|---|
| Gene name | ATG18-1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| aug_v2a.02421.t1 | gi|585672916|ref|XP_006889678.1| | PREDICTED: WD repeat domain phosphoinositide-interacting protein 2 isoform X1 [Elephantulus edwardii] | 0.0 |
| aug_v2a.02421.t1 | gi|727000947|ref|XP_010390681.1| | PREDICTED: WD repeat domain phosphoinositide-interacting protein 2 isoform X4 [Corvus cornix cornix] | 0.0 |
| aug_v2a.02421.t1 | gi|676428687|ref|XP_009045356.1| | hypothetical protein LOTGIDRAFT_185236 [Lottia gigantea] | 0.0 |
| aug_v2a.02421.t1 | gi|543258416|ref|XP_005420401.1| | PREDICTED: WD repeat domain phosphoinositide-interacting protein 2 [Geospiza fortis] | 0.0 |
Transcript
| Transcript ID | aug_v2a.02421.t1 |
|---|---|
| Definition | - |
>aug_v2a.02421.t1 caccgaaagaatgttcaagcatagtttgtgttttccatgcaggttcttcacacaataagagatacgcctcccaacccctc aggtatgagcacatgcaatttgtcaatattttgtttacctctgttgtaattcaaaacattatgagaaaataaattagaga ataaaagtattgtttaagtcagaaaatttttgtgtgctgcatgtaatcaaaagatgcctccaagaaaatacaacaatttt ttaagacttttttttcaggtctttgttccctttctgtcaactcagacaactgttttctggcttatcctggaagtaatcag gtaggcaatcattgttattttcagctggttggtgcggagttctttgaagtactcgcatgtagaaaatcacttcattataa gaactggagtgctttatagggatttccacaactgagaaaaaccgcatctccatacatgacaaattaccataatttatgag tgtttgaaatgaccagtcagctgctgacacatcacttgctctatttagtgcctggaatgaatggcgatgtgaataaagtg gacttcttgttagttagttgtttatataataaacaaaataatacatggttactgggaaatatggaatatctcttcaagtg ttcaacttcatatctcactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnttttcgctccatttccttgtgagatatcaagtggaatactcaaagggaaaatccatatct ttgagtatctgcatactattcttcacatgttgtgggctcttcaccaacacaacaacagcgggctaaagaaaacaggattt cattttctcaagtgtgatatttaagagttattcttcgaggatgcgctggatatgagctgatatatataaccaacgaggcc gtaggctgagttggttattatcagctcatatccggctagtccgagaagaaaaactgttttagtaattttcaagcaattct cttgattttttcgggtgaaacctcctcaaatcgttacattttctttaccgaagacggcgcgaaaaatttttttccgacct ccaaaatttcagcacaagaaattccttatttggtcaaacttaacgataatggctcatatcatgggcttagggaaccaatc agaaagctggagaatcattatcctgagctaaaaatttactaataataattaaccaataggctgtgtttgttattgtttat ttgttttttgctatcagattggtgaagtccaaatctttgactgtgtaaatttggtaagtactgtaccatgccatcaacag gagtggttcttctagtgcttccttctggttattagtgttaacaaactgttataatattatgattattatttagctattgg ttcacagtcagtgtgtgccggctgagttatggatgcatgcaggaggttattaagcactagagaagcattagagtggcacg acgtagtggtcttaagtgtttagcaactgcccaagtgcatccataactaggttctataatattgacattattttatcaaa ttgtcgtctcttcaaacccattgaaaatcttagaggcatccatttcagtggcttccatgtgtcatcagggtgcgtccatt tgtttatggaggacaacgatgatgttggcaaattgcttagctgaaattgtgttacctagctagctatgttatgttattat tttcttatattaactttttttgtaaattatttctttattcactctggaaaggctgcctgaggtgagttaagggttcagtt tctaaagaaactggttttgatttggttggaaagagaaactccagtgagggtcaaatcactagtggtagaagaataggaag ctgaagtttcaagagttagctctttactctgatgaaggatcagcttcataatgttcatggggttgaaatttgacccttgt tgacctttttgaatttactgagatgattaacgaattaatgactgagttttctttgcagagagcagtaacaatgataccag ctcacgattcccctgtagctgctatggcatttaacagtgctggtaccaaactgtcaactgcatcagaaaaggcaagttag aacaatagagtgtgttcacatgacgtcacggcggccatgttggaggagtaaacaaagaaacagcggccatgttggaggag tgaaatattcttttgaggattgaactctatttttatgcaaattcctccttttgtttcattatgcaaatatggctttgggt cacatgagcaaacacactctataacctcattgcaggactcggtttccaaagccatttcgagaaatatgtatgcagtaatg atcacatgcatttctctttcatcagcatgtgtcaaataataattattattagatacatgctgattttatataagcaccgc aaggtgtccccttacccttaacatcatcttgctccgtcacttttggcgagatatacatcaaagatgcaaaaacagcaacc acaaagctaagataaagaaccaaaacgttagcactaaccctaatgttgaaaaaggtgatttacataattatgtttagatg tagtaagataccttgtggcacatatcaacataatttaagcacacgtgtactggacatttcaagtgagtttcgttagattt agtttgctctttatggatttttggccctctttcgtgtgtttggagatcacagttttcttctttaattattaatagagttt tatcttctgagaaataagacccgggggaattgtgcctgccatctgaccaacccttgacataaagaagaattgtagaggtt gttggtcctaaaccttaccagtttcacaatgtctaaaaaagatgattttggaaagaaactggagtcaaagatacccagat tagcataaaaataacatggagcctttgcgatgagttctttcctgtcattgcttttagctatccacttgttcccttaggga ttcattgagtattaccataaaattatttcagttggacatgttgtacccttgactattaggacttcaatggcaaatttctt attatgtttcatttttctagggtactgttatcagagtttattcaattccagacggccagaagctctatgaatttcgacgg ggagtgaaacggtacagggagaaagatttttttttcaatgtgaaatatactgtcattggggagcttaagcaaccacgaca acgagggcaacaaaaaccccacaaatttgcatatttgacagtgaaaaacagtatttttgcacgctttgcacgtgcatatt tcatcttttgacattttgcagacgttctcgttctttctacgacgtgaaatgacctgttttgcagttttgtggacgacttg agcatatgataacaaatgttaatttttgtcttcttatgccccaagcgctagttccaatttaattttaggatagttagaac acaattttcaagcataatgactttgagtaattgaaaaatgattgcagaaccgcgaagttacattttcagctgacgttctc gcttccgtcgacgccgtgtttgcttaagctccctattgtgaatattgcgactgaacttcatctttcctttgactttcaga tgtgtcaccattttttcattggctttcagccatgattctctgttcttgtgtgcatcaagcaatactgagactgtgcatat ttttaagcttgaggctccgaagaaagagtgagtttgtgaatttaatatctcaatccaggattgcaaggaattggatggca tgccaaattttgataatcattaacaagtgtctcattaagtcaaagccaaaccttcctgtttgtaaagtcaagttttctgt ttgtgtctgggctatttcttaggttaagattagatgactaaattctgtcttcatgttgagttctgttagggagacaccgg ggagacacttcatgaccttaaatttgtctgtaatgtgtgttcctcatcacaagcgacactgaagttgagttagagtgtac actttgtgaggcatacatcaaattacttgcaatcctgggcctatctgtaatttgaaatacagagtttttacctgcattca aactctgctggtgaacttgcgtgcattttatgtaaatcaagaagcatgatgtcttaacaacaagaaaatccacttattgt gataaagttagctcttgtagttagaaattgaagttatttatgcagtgattaaaagttttgtacctgccacctctttgaaa cttttgacccttttaacgtgtcctttttattttcaactgttttcatctgaagttcttagcttgacttgcaggcctactga cgaagcagctggatttatgggttattttggcaaagcactctctccaaccagttatcttcctgtgcaggtgaggaaaatta ttttatcattttggcagatctgtttgttctgtttcccttgaatttgctggagttgaatgtcagctgatcttttcgacact atgattgatttgcagatggccgaagtattcaaccaggaaagagcttttgccagtgttaggttaccacaagcaggtacttg tgcaaaggcaatgataactaagctagggccatttgggtgaagctaaatcaatagggagcctaagcatgcaaggtttttga gccacggatggcaaccggaagtgatcattttgcaggcaaggacattggtctctcccagattttcaaagtaatcgtttcta aagctcagagacttaaaaatataaatgtggtagcgtgaagacaagtaaaacaggaaaacagtacacttccggtgtccgtc cgtggctcaaaaacgttgcatggttaagctccctaatgcgtcaccatgaccatcgaccggaagtacgtcttcctcttatc gagaagtttcatgcattaatttgttctcggtacagaaacaactcgtcttgaccgttttcattgattttctttcctctaca ggccttagaaacgtttgtgcaatttcgatgtaagtatctttttgtcgtcgttcacagtggttgtttgttaaagctttctt tttaccccgaagcttttctttttaccactaacaacctttctctccccacccacaaaggattggcaagctcccacgactgc tagtctcaagtgcggatggttatctttacatctacaacatcgaccccgaggagggaggggactgcacacttctcaaacaa cacaggtaatagcgcttttagatatcgttatatatcctacatcgtttgagaagttccaaagagtgtactctaaggaaatt catggaaaatgacatgaattacatgattgtaataaggtctgttaggaattttaagctttttttatgtattttgtttcgtt atatatcttgacggagcatgtttgtgtctttgtgtcaggaaatcgcttacagtgcgcatttatgttcagaaaggggacgg actgatattttacgcgtatactttggtaccttcagtggaaagtgactcgggtcgttgtagtttcaaacgcaataggaccc ttttctcaaacctttagagacaacataacaataaagaaaagtacgacttctggtggacgtataaaagaagttaatgaaag atcttttattttcgtccaccaacatggcggcgatgacgtcacgtgaaaacctccaaaattagtgacttttaagtcgccct cgttgtcatggttacttatgctccatagtgttgcactcaagctcggggtatttattatcgatatcagtatttttgttatt tttgattttcagattaattggtcaaggagagggacttgacaagccattggtaagctcagtgacttcttttcagagcagtt ttcaaatgattgtcgaaagtaaggacacgatcacgattgctacgcttcgtgatgggtttaaaaatttcgcgccaattttt cgactaataggaagcaaaaccaaacccgttcgccttattcgcgtggtttttcccgcgctttgatatgtgattggctcatc gcgttgtttgctcctgctgtgattggttgcagtaagtactttggcatttatttcactgcagtcattccaaaacctctcta tttgccgttctcaacaaaactgtctattttcgcccccgaaacagttatttcactgatgcatgaatcatgagtgcgtaagg cacacccaaatttggccagattacttgacatgtaaccgagccctgacgttcttccccatggttctgtttatatctaaaat tcaggacgaggaaagtgcacccgcagatcccagtccttctccatcaaacaaagaagaagattctcaagacacacaaaccc aagctgccccaaactctcctccccgaggggatgtagggtcggatgattttgcccaaaacgccgcagacttcagcgaccct caggggactggaaacatgagattggatgacgaatcggagtatccaccgctgaccgttcacaacgactgagctcagagaag agaacgcttgggatgttttctgccgaccatattttggcccatcctgtgtcatcaacgggaagcattagtaatgcaattat ccagaaatttttagcaagtcgatttcactgcgttgttttatgtacattcttaagatcagcgaattcagaattcaagactt ttttggatgctttacattcgaagtgcttcttccatattcatacgcaaaccaaagttgtcgttaatgtttgttcag |
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Protein
| Protein ID | aug_v2a.02421.t1 |
|---|---|
| Definition | - |
>aug_v2a.02421.t1 MQVLHTIRDTPPNPSGLCSLSVNSDNCFLAYPGSNQIGEVQIFDCVNLRAVTMIPAHDSPVAAMAFNSAGTKLSTASEKG TVIRVYSIPDGQKLYEFRRGVKRCVTIFSLAFSHDSLFLCASSNTETVHIFKLEAPKKEPTDEAAGFMGYFGKALSPTSY LPVQMAEVFNQERAFASVRLPQAGLRNVCAISMIGKLPRLLVSSADGYLYIYNIDPEEGGDCTLLKQHRLIGQGEGLDKP LDEESAPADPSPSPSNKEEDSQDTQTQAAPNSPPRGDVGSDDFAQNAADFSDPQGTGNMRLDDESEYPPLTVHND* |
|